Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00832 ATGGCAGATTGGGGTTTGCAGGCAGTAGTGAGAGGATCCTGCAGCAGTGAGACTGATACACCGGTTTATAATATTATGGGTTCTGATGAACATTCTTGTTTTGCTGCTCCTTGTAGCTTCATGGGAGATGATTTTTCTCAGATTTTTCCCGATTATTTTGGAACTAATGCCAGTTTTGGGGAATTGGAAGGTCTGTTTAAGCCTTTTTGTCCTCCCGTTTTTCACCCTTTTTCCCCTCCGATTATGGCTACTTCCTCCATTTCTCTTCCCAGAGATAAAATCAAGGATGACCCAGAAAAAATTCAGCAGAAGAACCAGAATACTTCTGCAACTAAATGTAAAACCAGCAAGAAGAACCAGCAAACTAGGGTAGTGAAAGAGGTTTCAGCGGACGGAATATCTTCCGATGTGTGGGCATGGAGAAAATATGGTCAAAAACCGATAAAGGGTTCGCCCTATCCGAGAAGCTACTACAGATGCAGCAGCTCAAAGGGATGCTCCGCCAGAAAACAAGTGGAACGAAGCTATTCCGATCCATCCATCTTCACCATAACCTACACATCAGACCACAACCACGCCCACCCCACTCGCCGGAACTCTCTCGCCGGAAGCACCCGGAACAAGTTTCCGAAATCGAAAAACGCGGAAATCAACAGTAACACTTTCAACAAAGAAAACATGTTATCTCCTGCTTCTGCTTCAATGACTTCTAACGAAGAGGAGGTTGAGCACATCATTAGACTAAAGAAGGAAGAAGAACAGGTCATGGAAGAAGGCGACAGTGCTGAAGTTTTCTTGCCTGGTTTCTTCTCCAACGATGATTTGTTTCCAAGCGTAGAAGATTTGCTCTTTGGGTAG 858 44.52 MADWGLQAVVRGSCSSETDTPVYNIMGSDEHSCFAAPCSFMGDDFSQIFPDYFGTNASFGELEGLFKPFCPPVFHPFSPPIMATSSISLPRDKIKDDPEKIQQKNQNTSATKCKTSKKNQQTRVVKEVSADGISSDVWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSYSDPSIFTITYTSDHNHAHPTRRNSLAGSTRNKFPKSKNAEINSNTFNKENMLSPASASMTSNEEEVEHIIRLKKEEEQVMEEGDSAEVFLPGFFSNDDLFPSVEDLLFG 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45698139 45699197 + Bma021942.1 Bma05g00832 82916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00832 285 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 282 - -
Bma05g00832 285 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 282 IPR044810 GO:0003700
Bma05g00832 285 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00832 285 SMART WRKY_cls 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00832 285 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma05g00832 285 MobiDBLite consensus disorder prediction 190 216 - -
Bma05g00832 285 MobiDBLite consensus disorder prediction 197 216 - -
Bma05g00832 285 Gene3D WRKY domain 118 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma05g00832 285 ProSiteProfiles WRKY domain profile. 129 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00832 Bma-Chr5:45698139 Bma14g00891 Bma-Chr14:10081084 5.12E-36 dispersed
Bma05g00832 Bma-Chr5:45698139 Bma06g01183 Bma-Chr6:48898016 9.64E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57340 PF03106 WRKY 1.60E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00832 K13426 K13425 pvy:116107521 245.743