Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00833 ACAACTGCAAATGAACCAGTCGTAGCTGAAAATGGAGGAGAAAAGGTTGGTGGAAGTAGAAATAAAGGGCCGTTTGGCAGACCCAAAAAAGCTATTACTCAGAGAATCGCCTTCCACACAAGAAGTGTTGATGATATTCTAGATGATGGATTCAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAATAGCAGCTACCCAAGGAGCTATTACAGATGTACCTATCACACATGCAACGTCAAGAAACAGATACAGCGACTCGACAAAGATTCAGGCATCGTAGAGACGACTTACGAGGGCCTCCACAACCATCCTTGTGAGAAATTGATGGAGCTATTGACCCCACTCCTAAGACAAATGCGTTTCCTGCAAGGAAATTAA 381 43.57 TTANEPVVAENGGEKVGGSRNKGPFGRPKKAITQRIAFHTRSVDDILDDGFRWRKYGQKAVKNSSYPRSYYRCTYHTCNVKKQIQRLDKDSGIVETTYEGLHNHPCEKLMELLTPLLRQMRFLQGN 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45706280 45706787 + Bma021943.1 Bma05g00833 82917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00833 126 Pfam WRKY DNA -binding domain 48 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00833 126 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 123 IPR044810 GO:0003700
Bma05g00833 126 SUPERFAMILY WRKY DNA-binding domain 41 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma05g00833 126 PANTHER WRKY TRANSCRIPTION FACTOR 45-RELATED 14 123 - -
Bma05g00833 126 Gene3D WRKY domain 31 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma05g00833 126 MobiDBLite consensus disorder prediction 1 28 - -
Bma05g00833 126 SMART WRKY_cls 47 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00833 126 ProSiteProfiles WRKY domain profile. 42 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00833 Bma-Chr5:45706280 Bma06g01340 Bma-Chr6:50333972 5.60E-40 dispersed
Bma05g00833 Bma-Chr5:45706280 Bma02g00935 Bma-Chr2:49202332 1.83E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57341 PF03106 WRKY 1.60E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00833 - - pop:7457362 184.496