Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00834 ATGGATGATTCTGTGCTTGATGGTATTATACAGCGGCTTATAAAGGCTAAGGATGGTCGCAACACGAAACAGGTGCAGCTCACTGACACTGAAATCAAGCAACTTTGCGCTACGTCGAAGGAGATCTTTCTTAGCCAGCCTAATCTTCTTGAGCTCGAGGCTCCAATAAAGATCTGTGGAGATATTCATGGTCAATATTCTGACCTCTTACGGCTTTTTGAATACGGTGGATATCCACCTGATGCAAATTATTTATTTTTGGGGGATTATGTAGATCGTGGTAAGCAGAGCATTGAGACCATCTGTCTCCTCCTTGCCTACAAAATAAAATACAAGGAGAATTTCTTTCTTTTGAGGGGCAACCACGAATGTGCTTCCATCAATCGAATATACGGATTCTATGATGAATGCAAGAGGAGATTTAGTGTCCGTATATGGAGAACATTTACCGAATGCTTTAACTGTCTACCTGTTGCTGCCCTAATAGATGAGAAGATCCTTTGCATGCATGGTGGACTGTCTCCTGATTTAAAGAACTTGGATCAGATTAGAAATCTCGCTCGTCCTGTTGATGTGCCAGATCATGGTCTCGTATGTGATTTACTATGGGCAGATCCTGATAAGGATATTGACGGGTGGGGAGAGAACGACCGGGGTGTATCATTTACATTTGGTTCAGATAAGGTTGCGGAATTTCTTCAAACACATGACCTTGATCTCATTTGTCGAGCTCACCAGGTAGTTGTGGAAGATGGCTACGAGTTCTTTGCTAAGCGGCAGCTGGTAACTATATTTTCAGCGCCGAATTACTGTGGTGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGATACATTGACATGCTCCTTCCAGATTCTTAAATCTTCGGAGAAAAAACTAAGATTAGGTCAGAGCAACAACGCTGCAAGACCTGGAACTCCACCTCACAAGGTATGGAAAATTCTTCATCGTGAAGTAGAAGGCTAA 990 42.73 MDDSVLDGIIQRLIKAKDGRNTKQVQLTDTEIKQLCATSKEIFLSQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFSVRIWRTFTECFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRNLARPVDVPDHGLVCDLLWADPDKDIDGWGENDRGVSFTFGSDKVAEFLQTHDLDLICRAHQVVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSEKKLRLGQSNNAARPGTPPHKVWKILHREVEG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45708243 45710772 - Bma021944.1 Bma05g00834 82918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Bma05g00834 329 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Bma05g00834 329 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Bma05g00834 329 SUPERFAMILY Metallo-dependent phosphatases 22 302 IPR029052 -
Bma05g00834 329 SMART pp2a_7 27 298 IPR006186 GO:0016787
Bma05g00834 329 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Bma05g00834 329 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Bma05g00834 329 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Bma05g00834 329 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 1 320 - -
Bma05g00834 329 CDD MPP_PP1_PPKL 5 295 - -
Bma05g00834 329 Gene3D - 1 306 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00834 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - cit:102611078 596.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00834 Bma12g00065 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00278 Bma-Chr3:2072819 Bma05g00834 Bma-Chr5:45708243 0 dispersed
Bma05g00834 Bma-Chr5:45708243 Bma13g00408 Bma-Chr13:7524049 0 dispersed
Bma04g01251 Bma-Chr4:37279913 Bma05g00834 Bma-Chr5:45708243 2.33E-168 transposed
Bma12g00065 Bma-Chr12:1224784 Bma05g00834 Bma-Chr5:45708243 4.89E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g50 Blo02g01122 Blo03g00225 Bda06g00121 Bda08g00504 Bpe05g00660 Bpe07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0815 Cone9ag0815 . . . . . . . . . . Bma05g00834 Bma12g00065 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221