Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00841 ATGGAACAGAAAAGCTTTTTGTTGTCGGCTTTGGGTGTAGGCCAGACTCGAGTACTTCTAACAAGTGCTGCTTATGTTCATCTAAAACATGCCGACGTCTTCAAACATACTCGTAACCTCTCTCCGGCAAGCCGGGCAATATTGCTCTCTGGACCTACTGAACTCTACCAACAAATGTTAGCCAAGGCTTTTAAGAGATCAACTTCAGAGTCAACATTAGAACGATGGTCTGGCTTATTTGGATCAGTTTCAAGCTTTCTTCAAGGGGAAGAACCAAAAGGTGTATATATGAAGAAGAGGGGAGCAGAACGGACTTCTTGTCTTACAAAGCTACGAAGAAATGCCTCTGCCTCAGCCAACATTATCAACATTGCTGCACAATCCTCCCCTGCAAATATAGTGCCTCTCAAGCGCACCAGCAGCTGGTCATTTGATGAAAAGCTTCTGATTCAGACTCTGTATAAAACTCTTGTGTTTGTGTCTAAAACTAGTCCCATTGTTCTATATCTTCGAGACGTGGATAACTTCTTGCTCAGGTCACCAAGGATATATAACTTATTTCAGAAAATGTTGAAGAAACTGTCTGGAAAAATATTAATTTTAGGGTCGAGAATTCTTGATCCAGGCGATGATTTTAGGGAGGTGGATGAGAGGCTTACTGCTCTTTTCCCTTATAATATTGAGATTAAACCTCCGGAAGAAGAACCTCATCATGTTAGCTGGAAGTCCCAATTAGAGGAAGATATGAAGACGATCCAGGTTCAGGATAATAGAAACCACATCATGGAAGTCCTTTGGTCGAATGATCTTGATTGTGATGATCTGGATTCAATCTGCATTGCAGACACAATGGTTCTGAGTAACTACATAGAAGAGATTGTAGTCTCTGCAATTTCATATCATTTAATGAATAGTAAAAATCCTGAATACAGAAATGGAAAACTCGTTATTTCTTCTAAAAGTTTGTCCCATGGATTGAGTATTTTTGAGGAAGGCAAGTCGAGTGGCAAATATACATTAAAGATGGAAGCTCAGGCCGAAACATCAAAGGAACCCAGAGGGGAAGGAGATGCCGGCTTGAAGCCTGAAACAAAATGTGAAACCACCGCTCCTGGAAACAAAAGTGGAAACGAAACAGCTGCTCCAGCAGCTTCAAAAACAGATGCAGAGAATTCAGCTCCACCGTCAAAAGCTCCAGAAGTTCCACCTGATAATGAGTTTGAGAAACGCATAAGGCCAGAAGTCATACCAGCAAATGAGATTGGTGTTACATTTGCTGATATTGGTGCCTTGGAAGATATCAAAGAATCTCTTCAGGAGCTAGTAATGCTCCCTCTTCGAAGACCAGACCTATTTAATGGAGGTCTTCTTAAGCCTTGCAGAGGCATATTGCTATTTGGTCCTCCAGGCACTGGGAAAACCATGCTGGCAAAGGCCATAGCCAAAGAAGCTGGTGCAAGCTTCATTAACGTATCCATGTCAACCATAACTTCCAAATGGTTTGGAGAAGATGAGAAAAACGTTCGAGCATTATTCACCTTGGCGTCCAAAGTATCCCCAACTATTATTTTTGTGGATGAAGTAGATAGCATGCTTGGTCAGCGAACAAGAGCAGGGGAGCATGAAGCAATGCGGAAAATAAAAAATGAATTCATGACTCATTGGGACGGGAATTTGATTAATTGTAATATTAACTGTTCAAACCAGAACTTGTGCACTACATCGGCCTATCGGCCAGTTCGGGAGTTAATACAACAAGAGAGACTTAAGGATGAAGAGAAGAAACGAAGAGCAGTTGAGGGACAGAATGCAGGAGACGTAGCAGACTCAGTTGCGGCCAGCTTTGCAGCTGAGGGATCTATAATGAGCGAATTGAGACAGTGGAACGACTCGTATGGGGAAGGGGGCTCCAGAAAGAAGCAACAATTGTCATACTTCCTATGA 1944 42.28 MEQKSFLLSALGVGQTRVLLTSAAYVHLKHADVFKHTRNLSPASRAILLSGPTELYQQMLAKAFKRSTSESTLERWSGLFGSVSSFLQGEEPKGVYMKKRGAERTSCLTKLRRNASASANIINIAAQSSPANIVPLKRTSSWSFDEKLLIQTLYKTLVFVSKTSPIVLYLRDVDNFLLRSPRIYNLFQKMLKKLSGKILILGSRILDPGDDFREVDERLTALFPYNIEIKPPEEEPHHVSWKSQLEEDMKTIQVQDNRNHIMEVLWSNDLDCDDLDSICIADTMVLSNYIEEIVVSAISYHLMNSKNPEYRNGKLVISSKSLSHGLSIFEEGKSSGKYTLKMEAQAETSKEPRGEGDAGLKPETKCETTAPGNKSGNETAAPAASKTDAENSAPPSKAPEVPPDNEFEKRIRPEVIPANEIGVTFADIGALEDIKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRAGEHEAMRKIKNEFMTHWDGNLINCNINCSNQNLCTTSAYRPVRELIQQERLKDEEKKRRAVEGQNAGDVADSVAASFAAEGSIMSELRQWNDSYGEGGSRKKQQLSYFL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45960657 45965482 - Bma021956.1 Bma05g00841 82925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00841 647 PANTHER TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2-LIKE ISOFORM X1 609 647 - -
Bma05g00841 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 560 IPR027417 -
Bma05g00841 647 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 568 606 - -
Bma05g00841 647 MobiDBLite consensus disorder prediction 344 362 - -
Bma05g00841 647 PANTHER TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2-LIKE ISOFORM X1 15 63 - -
Bma05g00841 647 PANTHER TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2-LIKE ISOFORM X1 568 606 - -
Bma05g00841 647 CDD AAA 461 554 - -
Bma05g00841 647 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 609 647 - -
Bma05g00841 647 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 64 561 - -
Bma05g00841 647 Pfam ATPase family associated with various cellular activities (AAA) 463 561 IPR003959 GO:0005524|GO:0016887
Bma05g00841 647 SMART AAA_5 459 590 IPR003593 -
Bma05g00841 647 Gene3D - 422 557 IPR027417 -
Bma05g00841 647 MobiDBLite consensus disorder prediction 368 392 - -
Bma05g00841 647 PANTHER TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2-LIKE ISOFORM X1 64 561 - -
Bma05g00841 647 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 15 63 - -
Bma05g00841 647 MobiDBLite consensus disorder prediction 344 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00841 - - - fve:101296861 769.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00841 Bma-Chr5:45960657 Bma09g00746 Bma-Chr9:45919243 1.89E-11 dispersed
Bma12g01184 Bma-Chr12:44659318 Bma05g00841 Bma-Chr5:45960657 1.17E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75