Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00851 AGAGAATCTGATAGAAACCCGAAAATGTTTCCTGCAACCAAGTTCAGCGAGCATCTTAACCAGTCTAAACTCTTCTCCCGGACGGAAATGAAACCTAAAGTTGTGAGAATATTAACCACTGATGAAGACGCGACTGATTCTTCTAGTGACGAAGAATGTGTTGTTTATCCCCGTAGAAGAATCAAGAGGTTTGTAAATGAAATCATCATCGAGTTGCCGAGTTCGAAGGCGGTAGGAGGAGTTTGTCCGGCCAAACCAACGAGAACTTGCACGAAAAAGTCAACCGGGAAATCAGCGGTTAATCTGCGGCCTATGAAGCTGCAGCCCGAGAAAAGATTTCGCGGCGTTCGACAGAGACCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCACTGCGACGTGTTCGTCTGTGGTTGGGAACATATGACACTGCTGAAGAAGCTGCAATGGTTTACGACAACGCCGCCATTAAACTCCGGGGACCGGATGCACTTACGAATTTCGCCACTCCGACGAGTTTCAGCAACACAGCCTTACAACTGGACGTATACAGCGAAAAATCACGTCTCAATTCGGATGAAGTATTCAGATTCGGGTTCTCGTCGTGGAACGAGGAAGATTCCTTCCAGCTGGAAGATATCGGCGACCTTTTCGGGTCGGATCCTATTATCGCGCTGTAA 681 48.46 RESDRNPKMFPATKFSEHLNQSKLFSRTEMKPKVVRILTTDEDATDSSSDEECVVYPRRRIKRFVNEIIIELPSSKAVGGVCPAKPTRTCTKKSTGKSAVNLRPMKLQPEKRFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFATPTSFSNTALQLDVYSEKSRLNSDEVFRFGFSSWNEEDSFQLEDIGDLFGSDPIIAL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46063794 46064761 + Bma021967.2 Bma05g00851 82935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00851 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 180 - -
Bma05g00851 226 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
Bma05g00851 226 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Bma05g00851 226 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Bma05g00851 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 11 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00851 Bma-Chr5:46063794 Bma10g01270 Bma-Chr10:45195057 7.01E-57 dispersed
Bma15g00086 Bma-Chr15:961066 Bma05g00851 Bma-Chr5:46063794 6.25E-24 dispersed
Bma13g00544 Bma-Chr13:11551028 Bma05g00851 Bma-Chr5:46063794 5.98E-39 transposed
Bma12g00601 Bma-Chr12:27326539 Bma05g00851 Bma-Chr5:46063794 6.85E-16 wgd
Bma12g01190 Bma-Chr12:44724663 Bma05g00851 Bma-Chr5:46063794 2.55E-36 wgd
Bma12g00051 Bma-Chr12:1076420 Bma05g00851 Bma-Chr5:46063794 5.26E-16 wgd
Bma14g00624 Bma-Chr14:6744262 Bma05g00851 Bma-Chr5:46063794 1.63E-65 wgd
Bma05g00851 Bma-Chr5:46063794 Bma07g01679 Bma-Chr7:52368266 6.32E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57342 PF00847 AP2 6.70E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00851 - - pvy:116145351 199.904