Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00859 ATGGCGGATGCTGCAATTGCCCAAATGTCTGTCAATGGCGGAGAAGTTCCAACGAAGAAACCAAGGAACAGTAGGAAGGCACTGAAGGAGAAAAATCCTTCACCGAATGAGGCAATCAGCGTCAACGAAAACGCTCCTACTACGATTCCCGAATTCTCCAATGATGATCCGGCGAAGGAGAACCATGAGAGCCTCTCTCAGACTCGGTCTTCAGCTAAGAAAGGGAAAACGAAAGCTCCTTCGAAGAAACAGACCAAGCAATCCTTCGACAAGGAATTGCAAGAAATGCAGGAAATGCTTCAGAAAATGACGCTCGAGAAAGAAAAGACCGAGGATCTGCTGAAAGCTAAAGATGAAATAATAAAGCTGAAGGACGAAGAGCTTGAAACGCGTGGAAAAGAGCAGGAGAAGCTTCAGGTGGAATTGAAGAAGTTGCAGAAATTGAAGGAATTTAAACCTATCATGACTTTCCCTACAATTCCATCCCTAAAAGACAAAGAGCTGGAGAACAAAGAGAAGAAAAAGGGATGCCATGAAAAGAAAAGGCCTCCTCCACCCTACATATTATGGAGTAAAGATCAATGGAATGAGATCAAGAAGGAGAATCCAGAGGCAGACTTTAAAGAAATCTCTAACATTTTGGGGGCGAAGTGGAAAAATGTCACTGTGGAAGATAAAATGCCGTATGAACAGAAGTATCAGGCTGAAAAGGAAGCCTATCTGCAGGTAATTTCCAAAGAGAAACGCGAAAGTGAAGCAATGAAACTATTGGAGGAGGAGCAGAAACAGAAGATTGCAATGGAGCTTCTTGAACAATATCTCCAGAAAGAAAGAGATCCATCGAAACCCAAGCAACCAATGTCTGCATTTTTCCTCTTCTCTAATGAGAGGCGTTCAGCTCTGCTTTCAGAGAACAAAAACGTCTTGGAGGTTTCGAAGATCTTGGGTGAAGAGTGGAAGAATATGACAGAAAAGCAGAGATCGCCATATGAAAAGACGGCGAAGAAGAACAGGGAAAAGTATGTGCAAGAAATGGAAGTTTACAGACAGAAGAAAGAGGAAGAAGCTGAACTTGTCAGGAAGGAGGGGGAAGAGCAACTGAAGCTTCAGAAACACGAAGCTCTGCAACTGCTGAAGAAGAAGGAGAAAACCAATGAAATAATCAAAAAAACGAGAGAAGATCGTCAAAAGAAGAAGAAAGAGAAGGAGGAGAAGAAGAACACCGACCCCAACAAGCCCAAAAAACCCGCCTCCTCTTACCTATTATTCAGTAAAGAAGCCAGGAAGAACTTGTCAGAGGAGAGACCTGGGATCAACAACTCCACTCTTAATGCTTTGATTTCGTTCAAGTGGAAGGAGATGAATGAAGAAGAAAGGAAGATGTGGAATGACAGAGGAGCAGAATTAATGGACGCCCACAAAAAAGAAATGGAGGAATACAATAAGTCTGTGGCTGAAACAGAGAAGAACAGAGCAAATGCATGA 1485 42.83 MADAAIAQMSVNGGEVPTKKPRNSRKALKEKNPSPNEAISVNENAPTTIPEFSNDDPAKENHESLSQTRSSAKKGKTKAPSKKQTKQSFDKELQEMQEMLQKMTLEKEKTEDLLKAKDEIIKLKDEELETRGKEQEKLQVELKKLQKLKEFKPIMTFPTIPSLKDKELENKEKKKGCHEKKRPPPPYILWSKDQWNEIKKENPEADFKEISNILGAKWKNVTVEDKMPYEQKYQAEKEAYLQVISKEKRESEAMKLLEEEQKQKIAMELLEQYLQKERDPSKPKQPMSAFFLFSNERRSALLSENKNVLEVSKILGEEWKNMTEKQRSPYEKTAKKNREKYVQEMEVYRQKKEEEAELVRKEGEEQLKLQKHEALQLLKKKEKTNEIIKKTREDRQKKKKEKEEKKNTDPNKPKKPASSYLLFSKEARKNLSEERPGINNSTLNALISFKWKEMNEEERKMWNDRGAELMDAHKKEMEEYNKSVAETEKNRANA 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46131362 46133608 + Bma021978.1 Bma05g00859 82943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00859 494 Gene3D High mobility group box domain 273 364 IPR036910 -
Bma05g00859 494 Gene3D High mobility group box domain 393 493 IPR036910 -
Bma05g00859 494 CDD HMGB-UBF_HMG-box 181 245 - -
Bma05g00859 494 SUPERFAMILY HMG-box 171 242 IPR036910 -
Bma05g00859 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 180 248 IPR009071 -
Bma05g00859 494 Pfam HMG (high mobility group) box 413 481 IPR009071 -
Bma05g00859 494 Pfam HMG (high mobility group) box 181 242 IPR009071 -
Bma05g00859 494 Pfam HMG (high mobility group) box 283 349 IPR009071 -
Bma05g00859 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 283 349 IPR009071 -
Bma05g00859 494 Coils Coil 331 362 - -
Bma05g00859 494 Coils Coil 364 408 - -
Bma05g00859 494 MobiDBLite consensus disorder prediction 1 90 - -
Bma05g00859 494 MobiDBLite consensus disorder prediction 55 69 - -
Bma05g00859 494 Coils Coil 470 494 - -
Bma05g00859 494 MobiDBLite consensus disorder prediction 375 421 - -
Bma05g00859 494 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 413 481 IPR009071 -
Bma05g00859 494 MobiDBLite consensus disorder prediction 35 51 - -
Bma05g00859 494 MobiDBLite consensus disorder prediction 375 412 - -
Bma05g00859 494 CDD HMG-box 413 478 - -
Bma05g00859 494 SUPERFAMILY HMG-box 276 353 IPR036910 -
Bma05g00859 494 Coils Coil 82 126 - -
Bma05g00859 494 MobiDBLite consensus disorder prediction 164 186 - -
Bma05g00859 494 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 490 - -
Bma05g00859 494 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 490 IPR044601 GO:0003677
Bma05g00859 494 CDD HMGB-UBF_HMG-box 283 346 - -
Bma05g00859 494 Gene3D High mobility group box domain 177 272 IPR036910 -
Bma05g00859 494 MobiDBLite consensus disorder prediction 162 188 - -
Bma05g00859 494 SMART hmgende2 282 350 IPR009071 -
Bma05g00859 494 SMART hmgende2 412 482 IPR009071 -
Bma05g00859 494 SMART hmgende2 179 249 IPR009071 -
Bma05g00859 494 SUPERFAMILY HMG-box 407 491 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00859 K09273 UBTF; upstream-binding transcription factor - tcc:18606663 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01708 Bma-Chr1:53223305 Bma05g00859 Bma-Chr5:46131362 4.44E-07 dispersed
Bma05g00859 Bma-Chr5:46131362 Bma14g01541 Bma-Chr14:31171398 2.03E-06 dispersed
Bma05g01290 Bma-Chr5:52272695 Bma05g00859 Bma-Chr5:46131362 1.41E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57344 PF00505 HMG_box 3.70E-14 CL0114 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00859 Bma_Chr05 FPKM 1.617424 1.745018 1.246677 0.549479 1.390824 2.222277 2.271378 0.229598 0.170589 0.103906