Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00866 AAGAGGATGGAGAGCAGAAGAGTTTGTGTTACTGGTGCTTCTGGCTTTATCGGTGCTTCGCTTGTCAAGAAGCTCTTGGAAAATGGCTTCACCGTCCACGCCACTCTCAGAAACCTAGAGGATAGATCAAAAGTAGGTCTCTTGAAATCTCTCCCCAATGCAGAGACCAAATTAGTGTTATTTCAAGCAGATATATATAACCCAGATGAGTTTTCTCCCGCTATTACTGGGTGCGAGTACGTATTTCACGTGGCGACGCCATTGCAGCACGATAGTCAAAGCTCCAAGTTCAAGAATACTTGCGAGGCTGCTGTTGCTGGAATGAAAAGTATTGCTGATTCTTGCATTCGATCGCAAACTGTCAAGCGGCTGATATACACTGCTTCTTGTGTCTCATTGTCGCCATTGAAAGAAGATGGAAATGGGTTTAAATCTTCCTATACGGACGAATCTTTTTGGACGCCCCTTGATATCTCCCTCACTAATTCCACTGAAGCTTTACTGGCATATACAAGATCAAAGACTTTAGCAGAGAAAGTGGCGCTGAGCTATAATGAGGTTGAAAATGCTAAACTGGAAGTAGTAACACTTGCTTGTGGCCTAACTGGAGGAGAAACTCTTGTTTCGTATTTGACGGGTAGTGTTCTAGTATTGTTATCTCCAATTACCGGCAATTTGGATATGTACAAGACGTTGAAATTCTTGCAAGAACTTTGGGGTTCGATTTTACTTGTTCATGTCGAGGATGTTTGTCAAGCGCATATCTTCTGCATGGAAAAGCCGTCCATGAAAGGAAGGTTCCTCTGTGCAGCTCTCAACCCAATCATTAAAGACATTGCAGTGTATTACAAAGAAAACTATCCCGAATCCCGCATCTCGGAAGAATTTATGGAGGAGCAAAAAGAGGCAATCAAGTTCGACGGATCGAAGTTGATGCAGATGGGATTCGAGTATAAATACGGTTTAAGCGACATAATCAATGACTGTGTGGCCTCGGCAAGGCGGCTTGGGGTCTCTCTTTCGACATAA 1029 43.44 KRMESRRVCVTGASGFIGASLVKKLLENGFTVHATLRNLEDRSKVGLLKSLPNAETKLVLFQADIYNPDEFSPAITGCEYVFHVATPLQHDSQSSKFKNTCEAAVAGMKSIADSCIRSQTVKRLIYTASCVSLSPLKEDGNGFKSSYTDESFWTPLDISLTNSTEALLAYTRSKTLAEKVALSYNEVENAKLEVVTLACGLTGGETLVSYLTGSVLVLLSPITGNLDMYKTLKFLQELWGSILLVHVEDVCQAHIFCMEKPSMKGRFLCAALNPIIKDIAVYYKENYPESRISEEFMEEQKEAIKFDGSKLMQMGFEYKYGLSDIINDCVASARRLGVSLST 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46208805 46211067 + Bma021985.1 Bma05g00866 82950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00866 342 Pfam NAD dependent epimerase/dehydratase family 8 263 IPR001509 -
Bma05g00866 342 Gene3D - 2 341 - -
Bma05g00866 342 CDD FR_SDR_e 8 316 - -
Bma05g00866 342 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 332 - -
Bma05g00866 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 332 IPR036291 -
Bma05g00866 342 PANTHER ANTHOCYANIDIN REDUCTASE-LIKE 5 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00866 - - - csin:114258680 428.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00866 Bma14g00556 CCT
Bma05g00866 Bma14g00556 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01085 Bma-Chr2:52572124 Bma05g00866 Bma-Chr5:46208805 1.30E-104 dispersed
Bma05g00866 Bma-Chr5:46208805 Bma11g00355 Bma-Chr11:3779129 8.87E-60 dispersed
Bma05g00866 Bma-Chr5:46208805 Bma02g01092 Bma-Chr2:52651151 3.71E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g117 Blo02g01143 . . Bda08g00477 Bpe05g00685 . . Bma14g00556 . . . Cma15g01274 . Car15g01148 . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . Csa05g00211 Chy09g01288 . . . Bda07g00462 . . Bpe11g00712 Bma05g00866 . . . Cmo15g01343 . . . . . Cpe13g00115 Bhi12g00156 . . Lac11g2008 . . Lcy12g1577 Cla01g00195 Cam01g0201 Cec01g0195 Cco01g0200 Clacu01g0197 Cmu01g0193 Cre09g2314 Lsi09g00183 . . Cme09g01832
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003504 4 2 0 3 1 1 0 1 1 2 1 1 0 2 4 0 1 1 0 1 3 2 1 2 1 3 1 3 1 4 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00866 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0