Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00868 ATGGAGAACGGCTGCTGGGTATGGGAGCAGAAGACACTCATAAGCGAGCTAGTTCAAGGGATGGAGATGACAAAGCAGTTGAAGGAGGAGCTAAATGGAACCTCCTCGAATGAAATTTGCAGAGAGTTATTAGTACAAGGGATTTTATCTTCGTACGAGAAAGCTCTTTTGATGCTTCAATGGAGTGGATCGACTGCTCAGCCGCAGTCTCCGACTCCCATTAATGGAAGTCCCCAGACTGAGGAATTCAACAGAGGTGCAGAGGACTATCAGGAGCAGAAGGAAAGCTCGAAGAAGAGAAAGATGATGCCGGTGTGGACAGAGCAGGTGACACTGAATTCAGAGAACGGACTAGAAGGACCACACGACGACGGCCATAGCTGGAGAAAATACGGCCAAAAAGACATTCTTCGCGCCAAATTTCCGAGGTACTACTACAGATGTACTTATCGCAGCACTCAAAACTGCTGGGCTACAAAGCAAGTGCAGAGATCAGACGAAAACCCTACTGTTTTCGAAATAACATACCGGGGAAAACATACGTGCTCCAACCGCAGCCAGGCCAATCCTCCGTCGCCGTCGACGGAGAAGAAAGAGCAGAAGCAAAACGACGATATTCTTCGTCAACAGCAGTTTCACAAAGAAACTGGACCCTCTTTCTGTTTTCCTTCTTCCCCGTTTGGATGCGAGGAAATCGGAAGCAATGGTATACCGCTTTCATGTCTCGACGATTTCTCTCTCTTCAGCAGCTTTTCTCAGCCATTCGCCTTGCCGGACTCGCTAGAATCAAGCTCTGGATTTTACCCCGGCGAGAAATTCATCGATCTGGGGGCTCAAAAGGCGCAAAGATCAGAATCTGCTTTAACAGAGATTATCTCGGCGACCACCTCGACTACCAACTCTCCGATTCTGGATTTGGATTTCTCTCTTGACTCGATTCAGATTGACCCAAATTTTCCATTTGACAACCATGAATTATTTTTCTTAAGATGA 993 47.13 MENGCWVWEQKTLISELVQGMEMTKQLKEELNGTSSNEICRELLVQGILSSYEKALLMLQWSGSTAQPQSPTPINGSPQTEEFNRGAEDYQEQKESSKKRKMMPVWTEQVTLNSENGLEGPHDDGHSWRKYGQKDILRAKFPRYYYRCTYRSTQNCWATKQVQRSDENPTVFEITYRGKHTCSNRSQANPPSPSTEKKEQKQNDDILRQQQFHKETGPSFCFPSSPFGCEEIGSNGIPLSCLDDFSLFSSFSQPFALPDSLESSSGFYPGEKFIDLGAQKAQRSESALTEIISATTSTTNSPILDLDFSLDSIQIDPNFPFDNHELFFLR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46286951 46288135 - Bma021988.2 Bma05g00868 82952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00868 330 MobiDBLite consensus disorder prediction 179 204 - -
Bma05g00868 330 ProSiteProfiles WRKY domain profile. 117 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00868 330 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 325 - -
Bma05g00868 330 MobiDBLite consensus disorder prediction 64 102 - -
Bma05g00868 330 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 325 IPR044810 GO:0003700
Bma05g00868 330 Pfam WRKY DNA -binding domain 123 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00868 330 MobiDBLite consensus disorder prediction 179 196 - -
Bma05g00868 330 SMART WRKY_cls 122 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma05g00868 330 SUPERFAMILY WRKY DNA-binding domain 121 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma05g00868 330 MobiDBLite consensus disorder prediction 85 102 - -
Bma05g00868 330 MobiDBLite consensus disorder prediction 64 84 - -
Bma05g00868 330 Gene3D WRKY domain 108 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00868 - - - egr:104443982 334.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00868 Bma14g00630 CCT
Bma05g00868 Bma14g00630 ECH
Bma05g00868 Bma12g00606 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01086 Bma-Chr2:52574198 Bma05g00868 Bma-Chr5:46286951 7.69E-55 dispersed
Bma04g00904 Bma-Chr4:12217853 Bma05g00868 Bma-Chr5:46286951 9.71E-57 dispersed
Bma05g00868 Bma-Chr5:46286951 Bma10g01288 Bma-Chr10:45702803 1.01E-51 dispersed
Bma08g01054 Bma-Chr8:49651807 Bma05g00868 Bma-Chr5:46286951 1.98E-24 transposed
Bma12g00606 Bma-Chr12:27387142 Bma05g00868 Bma-Chr5:46286951 8.10E-168 wgd
Bma12g00046 Bma-Chr12:1032456 Bma05g00868 Bma-Chr5:46286951 6.95E-168 wgd
Bma14g00630 Bma-Chr14:6773024 Bma05g00868 Bma-Chr5:46286951 7.06E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g118 Blo02g01144 . . Bda08g00475 Bpe05g00686 Bpe07g00075 . Bma14g00630 Cmo06g01049 Cmo16g00604 . . . . . Cpe14g00467 . . . . . . . . Cla07g01418 Cam07g1519 Cec07g1615 Cco07g1575 Clacu07g1507 Cmu07g1477 Cre07g1854 . . Cone6ag0843 Cone9ag0840 . . . . . . Bda07g00461 . . . Bma05g00868 Bma12g00606 . . . . Cma16g00553 Car06g00866 . . . . . . . . . . . . . . . . . . Csa04g00648 Chy07g01162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004375 2 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57345 PF03106 WRKY 5.40E-25 CL0274 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00868 Bma_Chr05 FPKM 20.591694 22.123528 6.851308 7.868462 4.70974 3.932392 4.969377 1.969189 1.871187 1.706641