Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00871 ATGGAAAGTACAAAAGGCGAGTCTTACTTTGTTTTCATGAACTATGATCCAGAATACGAACGTCTTCGAGCGGACCGAACAAATGAAGGGGCGTATAAGCTTGATCTATACTTAAGCAAGAAGCACGATGAGCTTCTGGCAAGCACATTGGAGGATGGAAGCTACAAAAAGACGATATCTTTGGTCATTGTTGATGGGTTTTCTGTGGAAATTACTGAAGACCAGGCGAATGTGCTTAGATCTGCGAATGAAGTTAGGGTCGTTGAGAAAAATCAAGAATTCGCG 285 42.11 MESTKGESYFVFMNYDPEYERLRADRTNEGAYKLDLYLSKKHDELLASTLEDGSYKKTISLVIVDGFSVEITEDQANVLRSANEVRVVEKNQEFA 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46325312 46325794 - Bma031212 Bma05g00871 82955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00871 95 Pfam Peptidase inhibitor I9 39 93 IPR010259 -
Bma05g00871 95 PANTHER OS01G0220500 PROTEIN 1 94 - -
Bma05g00871 95 SUPERFAMILY Protease propeptides/inhibitors 9 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00871 - - - qsu:112016484 169.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00871 Bma-Chr5:46325312 Bma06g01023 Bma-Chr6:46887749 2.44E-08 dispersed
Bma05g00871 Bma-Chr5:46325312 Bma01g00394 Bma-Chr1:3251914 6.05E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g120 Blo02g01146 . . Bda08g00471 Bpe05g00689 . . . . Cmo16g00602 . . . . . Cpe14g00466 . . . . . . . . Cla07g01419 Cam07g1520 Cec07g1616 Cco07g1576 Clacu07g1508 Cmu07g1478 Cre07g1855 . . Cone6ag0846 Cone9ag0843 . . . . . . . . . . Bma05g00871 . . . . . Cma16g00551 . . . . . . . . . . . . . . . . . . . Csa04g00649 Chy07g01161 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010675 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00871 Bma_Chr05 FPKM 10.846715 10.774213 12.023711 10.385879 16.017704 20.086691 18.448412 12.959105 10.941602 11.581203