Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g00875 | ATGATCGGTCGCAGGAGAGCCATGGAGGACGCAGTTACCATGTTACCTGGAGTTTTGGCTGGAGATTTTAAGTCGTACGACTTTTTCGGTGTGTACGACGGCCACGGTGGCGCATCGGTTGCGTCTGCGTGTAAAGATCGTCTGCACCATTTGCTGGCCAAGGAGGTGGAAAGTCGGACAGGCGGCGGCGACGAAATGGACTGGAAGAAGGTGATGACTTCGTGTTTTCTGAAGATGGACGAGGAGGTTTATGAAAAACAGGAAGATGTGGATAGCGCGGAGTTTAAGTCGATGGGGTCGACGGCAGTGGTGGTTATAATAGGGGAGGATGAGGTTGTGGTAGCTAATTGTGGAGACTCACGAGCCATACTTTATCGCGATGGCGTCGTTGTACCACTATCCCGTGATCACAAGCCTGATCTTCCTGATGAAAGGGAGAGAGTGGAGGCTGCAGGTGGAAGGGTCATAAATTGGAACGGATCTCGTGTTCAAGGAGTATTAGCCACTTCAAGATCAATCGGCGATCAATATTTGAAACCATATGTGATCCCCGAACCAGAGGTCACTATAAATGAGCGAACTGAGCTTGATGACTTTCTTATAATTGCTAGCGATGGCCTCTGGGATGTGATATCCAACGAGGTTGCGTGTGAGGTCGTGCAGAAATGTCTAAAATGCAAGAAGTTGTCAACGAGAATGAGTGGAAATTTTGCTGCTGAGGCGGCATCAATTATAGCTGAGCTAGCAATCGCAAGGGGGAGCAAAGGCAATATCAGCGTCATAGTTGTTGAGCTTCGGAAACCGAGCTGCACCAGTACTTGA | 822 | 49.15 | MIGRRRAMEDAVTMLPGVLAGDFKSYDFFGVYDGHGGASVASACKDRLHHLLAKEVESRTGGGDEMDWKKVMTSCFLKMDEEVYEKQEDVDSAEFKSMGSTAVVVIIGEDEVVVANCGDSRAILYRDGVVVPLSRDHKPDLPDERERVEAAGGRVINWNGSRVQGVLATSRSIGDQYLKPYVIPEPEVTINERTELDDFLIIASDGLWDVISNEVACEVVQKCLKCKKLSTRMSGNFAAEAASIIAELAIARGSKGNISVIVVELRKPSCTST | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 46405842 | 46408023 | - | Bma021995.1 | Bma05g00875 | 82959 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g00875 | 273 | SMART | PP2C_4 | 1 | 263 | IPR001932 | - | |
| Bma05g00875 | 273 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 265 | IPR001932 | - | |
| Bma05g00875 | 273 | Pfam | Protein phosphatase 2C | 3 | 258 | IPR001932 | - | |
| Bma05g00875 | 273 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 2 | 267 | - | - | |
| Bma05g00875 | 273 | CDD | PP2Cc | 1 | 265 | IPR001932 | - | |
| Bma05g00875 | 273 | SMART | PP2C_SIG_2 | 10 | 265 | IPR001932 | - | |
| Bma05g00875 | 273 | PANTHER | ALPHABET, ISOFORM E-RELATED | 2 | 267 | - | - | |
| Bma05g00875 | 273 | SUPERFAMILY | PP2C-like | 1 | 266 | IPR036457 | - | |
| Bma05g00875 | 273 | ProSitePatterns | PPM-type phosphatase domain signature. | 28 | 36 | IPR000222 | GO:0043169 | |
| Bma05g00875 | 273 | Gene3D | - | 1 | 270 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma05g00875 | Bma14g00520 | CCT | |
| Bma05g00875 | Bma14g00520 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma05g00875 | Bma-Chr5:46405842 | Bma08g01106 | Bma-Chr8:50040361 | 4.74E-87 | dispersed | |
| Bma05g00875 | Bma-Chr5:46405842 | Bma03g00142 | Bma-Chr3:1069355 | 5.68E-92 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g00875 | K14497 | - | ming:122081358 | 349.747 |