Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00877 ATGGCTTCCGCTGTCACCTTTTCAGCTTCTCAAGCTCGTCTTCCTCGCTCCAATTTTCTCGGGAAAACCCAGCCCTGTTTTCGTGCTCGCCAAACAGTCACTGTTCGGAGACAGTCTAAGACATGTGCGAAATTCGATCCATTTGAGATATTAGGAGGCAGAGGGCTCTGCAAAGGAGAACAAGGTCTGCAGTTAGAGCTCAAGAGAAGTCTCGAACGAACTGAGTCTCCAGTTTCAGAAACAGAGGAAAAGAAATCCGGTAGCTCGGAGCTCTCACTGTCCGAGACAATTGACGAAAATGAATTCGAAAAGGAGATGATGGGTATGACTGGGGGATTTCCTGGTGGAGAAAAGGGATTGAAGAGGTTCATTCAACAAAACCCACCTCCTCCAAAACCCAAAAAATCAATTTCAGAGACAGAAAAAGTTGTCGACTTTTCGACCATAGAAAAGCCAGAGCCACCCCAGTTGCCACTTCTAATGCCGGGAATGATCGCCATTGTTAAGAACTCGAACAACCCTTACTACATGTACTGTGGAATTGTTCAGAGGATCACAGATGGAAGAGCTGGAGTTCTTTTCGAGGGAGGAAATTGGGATCGTTTGATTACCTTCAGATTAGAAGAGCTTGAACGCAGAGAAAAAGGGCCTCCCATGAAAAATCCTAGATCTGCCATTTTAGAACCTCTGCTCCAGAAAATGAAGCAAAACAGTGAGCCATAA 723 45.5 MASAVTFSASQARLPRSNFLGKTQPCFRARQTVTVRRQSKTCAKFDPFEILGGRGLCKGEQGLQLELKRSLERTESPVSETEEKKSGSSELSLSETIDENEFEKEMMGMTGGFPGGEKGLKRFIQQNPPPPKPKKSISETEKVVDFSTIEKPEPPQLPLLMPGMIAIVKNSNNPYYMYCGIVQRITDGRAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAILEPLLQKMKQNSEP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46487356 46488078 - Bma022000.1 Bma05g00877 82961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00877 240 Gene3D - 155 224 - -
Bma05g00877 240 MobiDBLite consensus disorder prediction 213 240 - -
Bma05g00877 240 Pfam NAD(P)H dehydrogenase subunit S 160 211 IPR021659 GO:0009767
Bma05g00877 240 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 1 235 - -
Bma05g00877 240 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 1 235 IPR021659 GO:0009767
Bma05g00877 240 MobiDBLite consensus disorder prediction 70 95 - -
Bma05g00877 240 MobiDBLite consensus disorder prediction 70 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00877 K00345 ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:7.1.1.-] - tcc:18606708 275.789
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g137 Blo02g01151 . . Bda08g00464 Bpe05g00695 . . . . . . . . . . . . . . . . . . . Cla07g01099 Cam07g1399 Cec07g1261 Cco07g1241 Clacu07g1162 Cmu07g1142 Cre07g1523 . . Cone6ag0853 Cone9ag0854 . . . . . . . . . . Bma05g00877 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00661 Chy07g01150 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008625 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00877 Bma_Chr05 FPKM 0.0 2.562857 0.0 0.0 0.0 0.0 0.0 1.630481 0.0 0.0