Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00880 ATGGCGAATAATATTCTGGTCACGGGAGGCGCTGGATACATAGGCAGCCACACGGTGCTTCAGCTCCTACTCGCCGGTTACAGGACTGTCGTCGTCGATAATTTGGATAACTCCTCTGAAATCGCTCTTGCTAGAGTTAAGAAGCTCGCCGGCAAATTTGGCGACAACCTCTCATTTCATCAGGTTGATCTTCGTGACAAGCCAGCACTTGAAAACATTTTTGCTTCATATTCATTCGATGCTGTCATACACTTTGCCGGATTGAAAGCAGTTGGTGAAAGTGTTCATAAACCGTTGCTCTATTATAACAACAACTTAATTGGCACAATTACTCTACTAGAAGTCATGGCCGATCATGGATGCAAAAAGCTTGTGTTCTCATCATCAGCCACTGTCTATGGCTGGCCAAAGAAGGTCCCATGTACAGAAGAATTCCCCTTGTGTGCTGCAAATCCATATGGCCGAACCAAGCTCATTATAGAAGACATTTGTCGCGATATGTACAATTCAGACCCAGAATGGAAAATAATGTTGTTAAGATACTTCAACCCTGTGGGTGCTCATCCCAGTGGCCATATTGGAGAGGATCCTCGTGGCATCCCAAATAACCTCATGCCCTTTGTGCAGCAAGTTGCCGTTGGCAGGAGGCCAGCCCTGAGAGTCTTTGGAACTGACTATTCCACTAGGGACGGAACTGGGGTTCGTGATTACATACATGTTGTTGATTTAGCAGATGGACATATTGCTGCATTAACCAAGTTAGATGATCCTGAAATTGGTTGTGAAGTTTTCAATCTGGGTACGGGTCACGGTACATCTGTTTTGGAGATGGTCAAGGCATTTGAAAAGGCATCAGGAAAGAAAATTCCTCTTATAATGTCCGGGCGACGATCTGGTGATGCCGAAATTGTCTATGCGTCGACTGAGAAGGCAGAGAGGGAGTTGAACTGGAAGGCCAAATATGGGATCGAAGAAATGTGTAGAGATCAATGGAACTGGGCCAGCAAAAACCCTTACGGCTATGGATCTCCTAACTCTCAT 1041 45.44 MANNILVTGGAGYIGSHTVLQLLLAGYRTVVVDNLDNSSEIALARVKKLAGKFGDNLSFHQVDLRDKPALENIFASYSFDAVIHFAGLKAVGESVHKPLLYYNNNLIGTITLLEVMADHGCKKLVFSSSATVYGWPKKVPCTEEFPLCAANPYGRTKLIIEDICRDMYNSDPEWKIMLLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRPALRVFGTDYSTRDGTGVRDYIHVVDLADGHIAALTKLDDPEIGCEVFNLGTGHGTSVLEMVKAFEKASGKKIPLIMSGRRSGDAEIVYASTEKAERELNWKAKYGIEEMCRDQWNWASKNPYGYGSPNSH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46589807 46593148 + Bma031214 Bma05g00880 82964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00880 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 340 IPR036291 -
Bma05g00880 347 PRINTS Nucleotide sugar epimerase signature 235 250 - -
Bma05g00880 347 PRINTS Nucleotide sugar epimerase signature 300 317 - -
Bma05g00880 347 PRINTS Nucleotide sugar epimerase signature 261 276 - -
Bma05g00880 347 PRINTS Nucleotide sugar epimerase signature 31 47 - -
Bma05g00880 347 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 1 343 - -
Bma05g00880 347 TIGRFAM galE: UDP-glucose 4-epimerase GalE 4 339 IPR005886 GO:0003978|GO:0006012
Bma05g00880 347 Pfam GDP-mannose 4,6 dehydratase 6 329 IPR016040 -
Bma05g00880 347 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 343 - -
Bma05g00880 347 Gene3D - 5 274 - -
Bma05g00880 347 CDD UDP_G4E_1_SDR_e 4 333 IPR005886 GO:0003978|GO:0006012
Bma05g00880 347 Gene3D - 193 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00880 K01784 galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2] - zju:107429837 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00880 Bma-Chr5:46589807 Bma12g00612 Bma-Chr12:27429194 0 dispersed
Bma05g00878 Bma-Chr5:46494159 Bma05g00880 Bma-Chr5:46589807 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g147 . . . . . . . . . Cmo16g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01568 . . . . . . Bma05g00880 . . . . . Cma16g00541 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002117 2 3 0 3 2 2 4 2 2 2 2 1 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 5 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00880 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0