Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00887 ATGGCTTCTGCCTTTCTCGCAGTAGCATTGCCACATCAAACAGCGTTTGGTTCGCGCTCGGTTACCAGCTCTGACTTTTGTTTCCATCGTTCGAGGGCTTCTGTCAGCTTTTCGTCGTCTACCTTCGTCTCCTCGCTCTCTTCCTCCTCCTCCTCCTCCTCGTCTTCTTCTGTTGTTGAAGAAGAAGGCGAGAAAGACCGTTCTGAATTCGAGCCGCTTTCTCCGCAGTCTGAGTCTTCTACTGTAGACGTCAATAATTCTTCCTTCGGCGGTTGCAAGGCCTGTGGAAGAGAGGAAGTTGAGAAGGGATGCAATGGCGAAGGAAGGATTCAAGGTGGAATTGCAACAGTTCCAGGTTTTGGTTGGTGGCCAATTAAAGCATACAGGCCTTGCCCTGGATTCATAGCATCCGGTGGCCGGTATAAAAGGCGGGGACAAAGCATGGATGAAGTGGCAGGAGGAGGAAGGAGAGGAGCCAAACCAGAAACCAGTAGCAAAGACCAATCTGGGTAA 513 50.88 MASAFLAVALPHQTAFGSRSVTSSDFCFHRSRASVSFSSSTFVSSLSSSSSSSSSSSVVEEEGEKDRSEFEPLSPQSESSTVDVNNSSFGGCKACGREEVEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPGFIASGGRYKRRGQSMDEVAGGGRRGAKPETSSKDQSG 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46623783 46624692 + Bma022005.1 Bma05g00887 82971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00887 170 PANTHER OS01G0235100 PROTEIN 20 166 - -
Bma05g00887 170 MobiDBLite consensus disorder prediction 43 58 - -
Bma05g00887 170 MobiDBLite consensus disorder prediction 73 88 - -
Bma05g00887 170 MobiDBLite consensus disorder prediction 138 170 - -
Bma05g00887 170 PANTHER OS01G0235100 PROTEIN 20 166 - -
Bma05g00887 170 MobiDBLite consensus disorder prediction 43 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00887 - - - cpap:110819039 165.236
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g157 Blo02g01158 . . Bda08g00460 Bpe05g00703 . . . . . . . . . . . . . . . . . . . Cla07g01090 Cam07g1408 Cec07g1253 Cco07g1230 Clacu07g1155 Cmu07g1134 Cre07g1514 . . . . . . . Cme07g01540 . . . . . . Bma05g00887 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00673 Chy07g01137 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012887 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00887 Bma_Chr05 FPKM 29.877317 33.101437 57.70536 55.898823 37.470284 39.21962 32.334141 58.893574 59.085201 54.851231