Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00889 ATGGATCCCAAACTTACCGAAGTCTCGCAGTTCTTCGAGCGCTTCAAAGCTGCGTTTATCAGAAATGATTTCGATTCTTGCGATAAGTTTCTTTCCCTGCTCAAGGTGTTATTGACTGAGTTCAGAAGTCTTCCTCCATTGTTTGAAGAAACTGCTAATGCAACACAGGAACTGACCATAGCGAGGGATATTTACGAGCATGCTGTTTTTCTAAGTGTGAAGGTTGAGGATCAAGATGCTTTTGAGCGAGCTTTCTTTCAATTGAAACCTTATTACACAGATGCTCGGAATCACCTTCCTCCATCCCCACAAGAATACCCGATCTTGGGTCTTAACCTGCTTAGACTTCTAGTACAGAATAGAATTGGTGAATTTCATTCAGAACTAGAACTGCTTTCATCTACTGCTTTAGAGAATGCTTGCATAAAGCATGCTGTGGAGTTGGAGCAATCCTTTATGGAAGGGGCTTACAACCGTGTGTTGGGTGCTCGACAGACAGTACCGCATGAAACTTACGTTCATTTCATGGATCTACTGGCAAAGACTGTTAGGTAA 555 42.52 MDPKLTEVSQFFERFKAAFIRNDFDSCDKFLSLLKVLLTEFRSLPPLFEETANATQELTIARDIYEHAVFLSVKVEDQDAFERAFFQLKPYYTDARNHLPPSPQEYPILGLNLLRLLVQNRIGEFHSELELLSSTALENACIKHAVELEQSFMEGAYNRVLGARQTVPHETYVHFMDLLAKTVR 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46692209 46694371 + Bma022007.1 Bma05g00889 82973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00889 184 Gene3D - 5 184 - -
Bma05g00889 184 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 1 184 IPR006746 GO:0005838|GO:0006508
Bma05g00889 184 Pfam CSN8/PSMD8/EIF3K family 106 184 IPR033464 -
Bma05g00889 184 ProSiteProfiles PCI domain profile. 79 184 IPR000717 -
Bma05g00889 184 PANTHER BNACNNG39010D PROTEIN 1 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00889 K03031 PSMD8, RPN12; 26S proteasome regulatory subunit N12 - zju:107429793 308.145
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00889 Bma12g00619 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00619 Bma-Chr12:27459040 Bma05g00889 Bma-Chr5:46692209 3.14E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g186 . Blo03g00260 Bda06g00160 Bda08g00452 . Bpe07g00058 . . . Cmo16g00578 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0869 Cone9ag0875 . . . Cme07g01524 . . . . . . Bma05g00889 Bma12g00619 . . . . Cma16g00529 . . . . . . . . . . . . . . . . . . . Csa04g00683 Chy07g01126 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007132 3 1 1 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00889 Bma_Chr05 FPKM 4.377295 4.71016 5.733624 6.136504 6.932455 7.140668 7.708423 9.83207 8.963952 10.74552