Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00891 CAGAAAATGCCCGAACCGGAGCTCGACAGTCCGGCGGTCTTTCCTCTCAAAACGACGGTGGATGATAGGGACCCACTCATGGACTTCGATGTCGATATGGGCAGCCCATGGCCGTTGGATCAGATGTCTCCCATCCTTATCTCTTCCTCCGATCAGCCTTTCTCTCCGCTCTGGGCTTTCTCTGACGGAGAAGACGACGGGGACGGAAAACTTCATCTCCATTCCCGCTCAGTCCGCGGTATGAGTAATTTGAACTTGGTGTGTCAAAAGCCGACCCATAACATTGAAACAAGAGTTCTTCAACTTCCCCCTATGTGGGGACTTACATCAATGGAGAATCCAGATGGGTACTGTTTAATCAAAGAGAAGATGACTCGGGCCCTCAGATACTTGAAAGAATTGACAGACCAACACGTTCTAGCTCAGGTTTGGGCGCCCATCAAGAGCGGGGGCCGATATATGCTCACCACACTCGAACAACCCTTTGTTCTCGATGCACAAAGCAATGGGCTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCGATGGCGAAACTGATGGAGTTCTCGGACTTCCTGGCCGGGTTTTCAAGCAGAAATTGCCCGAGTGGACTCCAAATGTGCAATTTTACTCGAGCAAAGAGTATTCCAGACGGAATCACGCCCTTCACTACAATGTCCAAGGAACTTTAGCCTTGCCTATCTTCGAGCCGTCTGGGCAATGCTGTATTGGTGTTCTAGAGCTCATTATGAACTCTCCTAAAATCAATTATGCACCTGAGGTCGACAAAGTTTGCAAAGCTCTCGAGGCTGTAAACTTGAAAAGCTCGGAAATCTTGGATCATCCGAATACACAGGTCATCAGCTACTATATACTCTTGGCAATGCTTTTGAACCAGATTTGCAACGAAGGTCGCCAAAATGCATTGGCTAAAATTTTGGAGGTATTAACAGTTGTATGCGAAAGTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAGGCATGGGAGTGTTCTTGCCAATGGTGGTGGTTTGAGGAAGAGCTGTTCTAGCTTTGATGGCAGTTGTAAGGGTCGAGTCTGCATGTCTGCTACTGATTTAGCATCCTACGTAGTCGATGCTCGAGTTTGGGGGTTTAGAGAGGCCTGTCTTGAACACCATTTGCAGAAGGGCCAGGGAGTTGCAGGTCGGGCATTCTTGTCTCAAAGCTCGTGTTTTTCGACGGATATTACACAGTTCTGCAAGACTGAATACCCTTTAGTACACTATGCTCGATTGTTTGAGTTAAAGAGCTGTTTTGCAGTCTGTCTACGGAGTAGTTTTACCGGAGATGATGACTATATTCTTGAATTTTTCCTCCCATCTGCCATAACTGAATACTATGAACAGCTGGCTTTGTTGGGATCTATGTTGGCTACGATGAAACAGCATTTTCAAAACCTAGAGGTTGCGTCGGGAATCAAATTCGAAGAAGGTGAGGTTTTTGTAGAAATCATACAAGCTTCAACGGATGAAGGACTGAGTTCTAGATTCGAATATGTTCGAATACCTAAATCTGTCGATTTGGCACATGGGTCTAACGTGGCGACCAATGGTGGAGAGACGATTGGATTTAATTCGTTGAAACAGAAGTTAGTGGTGGTTTGTGATAATGAAGAAAACAATGGTGGGGCTGAGAATAAAACCCATAACTCCATTCCTTCACCTCGTAAGGACAGGAAGAAGACATCTGAGAGAAAACGTGGGAAAACGGAGAAATCGATAAGTTTAGACGTTCTTCAACAATATTTTACTGGAAGTCTTAAGGATGCCGCAAAGAGCCTTGGAGTTTGTCCGACCACAATGAAGCGGATCTGTCGGCAGCATGGAATTTCCCGATGGCCATCACGGAAGATCAACAAAGTTAACCGATCACTCTCGAAGCTAAAGCGTGTAATTGAATCTGTGCAAGTTGCTGAAGGGGCATTTGGTTTGACTCCTCTCACTACAAGTACTAGTTCTCCCCCATTTGCCCTGGATGGGCCAACTCAACGTAGCTCACCCGGCGATCATCACAGCGAGGAGAAAGAATCATCACTTGTCTCAAAAATTCCGAGAAACGACCCATCATCCTGGATGGAGGATAGACGCATTAGGGGAACTTCACGTTTGGAAGAATATACTCATGAGAAAAGTGGGTTCTTTCCCAAGATTTGTAAGGAGTCGAACAAGTCTAGAACGAAGAGTGGATCGAGGGAAGAGTCGGCAGGGACCCCTACTTCTCATGGATCTTGCCAAGGAAGTCCTGCTAATGAAAGCTTAGTAGCCAAAGATCCGCACGTTTTCCCCTGTCACGAACACCCAATCAAACGAGCAGATTCCCCTGAAAAACTCAATCCAATTGCTCCATTGCCAATTCGTGAAACACCGACAGAACCCGAAGAACCATTTGGAGCAATGCTTATAGAAGATGCAGGAAGTTCGAAAGATTTAAGAAACCTCTGTCCTTCTGCAGCAGATGCTGTTTTGGACGAGCAAATCCCAGAATCTTGTTGGCCGAATCTTCCCGGTTCAACTCCCACACAATTCGTCGATATCACCGGAACGAGGCAAGAAGCGAAGAGGATGACGATTAAGGCTACATACAAGGAAGATATAATAAGATTTCGCATACCTTTGAGCTCTGGTGTAGTGGTGTTGAAAGAAGAAGTGGCTAAGAGGCTAAAACTGGAGGTGGGTACTTTTGATATAAAATACATAGATGATGATCAAGAATGGGTTCTTATAGCCTGTGATGCAGACTTTCAAGAATGCGTTGATATTTCAAAATCATCAGGCAGTAATATAATTAGGCTCTTGATTCATGACTTATCAACCAATCTTGGGAGCTCTTGCGAGAGCACAGGGGAAGGATATTAG 2913 45.55 QKMPEPELDSPAVFPLKTTVDDRDPLMDFDVDMGSPWPLDQMSPILISSSDQPFSPLWAFSDGEDDGDGKLHLHSRSVRGMSNLNLVCQKPTHNIETRVLQLPPMWGLTSMENPDGYCLIKEKMTRALRYLKELTDQHVLAQVWAPIKSGGRYMLTTLEQPFVLDAQSNGLHQYRMVSLMYMFSVDGETDGVLGLPGRVFKQKLPEWTPNVQFYSSKEYSRRNHALHYNVQGTLALPIFEPSGQCCIGVLELIMNSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQVISYYILLAMLLNQICNEGRQNALAKILEVLTVVCESHKLPLAQTWVPCRHGSVLANGGGLRKSCSSFDGSCKGRVCMSATDLASYVVDARVWGFREACLEHHLQKGQGVAGRAFLSQSSCFSTDITQFCKTEYPLVHYARLFELKSCFAVCLRSSFTGDDDYILEFFLPSAITEYYEQLALLGSMLATMKQHFQNLEVASGIKFEEGEVFVEIIQASTDEGLSSRFEYVRIPKSVDLAHGSNVATNGGETIGFNSLKQKLVVVCDNEENNGGAENKTHNSIPSPRKDRKKTSERKRGKTEKSISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEGAFGLTPLTTSTSSPPFALDGPTQRSSPGDHHSEEKESSLVSKIPRNDPSSWMEDRRIRGTSRLEEYTHEKSGFFPKICKESNKSRTKSGSREESAGTPTSHGSCQGSPANESLVAKDPHVFPCHEHPIKRADSPEKLNPIAPLPIRETPTEPEEPFGAMLIEDAGSSKDLRNLCPSAADAVLDEQIPESCWPNLPGSTPTQFVDITGTRQEAKRMTIKATYKEDIIRFRIPLSSGVVVLKEEVAKRLKLEVGTFDIKYIDDDQEWVLIACDADFQECVDISKSSGSNIIRLLIHDLSTNLGSSCESTGEGY 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46706732 46710246 + Bma022009.2 Bma05g00891 82975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00891 970 MobiDBLite consensus disorder prediction 664 715 - -
Bma05g00891 970 MobiDBLite consensus disorder prediction 685 700 - -
Bma05g00891 970 CDD PB1_NLP 874 954 IPR034891 -
Bma05g00891 970 Gene3D - 870 954 - -
Bma05g00891 970 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 39 967 - -
Bma05g00891 970 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Bma05g00891 970 ProSiteProfiles PB1 domain profile. 873 955 IPR000270 GO:0005515
Bma05g00891 970 PANTHER PROTEIN NLP8 39 967 IPR045012 GO:0003700
Bma05g00891 970 SMART PB1_new 873 955 IPR000270 GO:0005515
Bma05g00891 970 Pfam PB1 domain 874 954 IPR000270 GO:0005515
Bma05g00891 970 Pfam RWP-RK domain 593 640 IPR003035 -
Bma05g00891 970 MobiDBLite consensus disorder prediction 570 591 - -
Bma05g00891 970 SUPERFAMILY CAD & PB1 domains 869 958 - -
Bma05g00891 970 MobiDBLite consensus disorder prediction 736 771 - -
Bma05g00891 970 MobiDBLite consensus disorder prediction 750 769 - -
Bma05g00891 970 MobiDBLite consensus disorder prediction 664 679 - -
Bma05g00891 970 MobiDBLite consensus disorder prediction 558 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00891 - - - csv:101212500 1259.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00891 Bma12g00621 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00962 Bma-Chr2:49645563 Bma05g00891 Bma-Chr5:46706732 1.13E-20 dispersed
Bma05g00891 Bma-Chr5:46706732 Bma06g01446 Bma-Chr6:51167442 6.46E-32 dispersed
Bma01g02411 Bma-Chr1:81688236 Bma05g00891 Bma-Chr5:46706732 1.55E-56 transposed
Bma12g00621 Bma-Chr12:27467195 Bma05g00891 Bma-Chr5:46706732 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00891 BCT 175 968 NLP Transcription Factor Family AT1G64530 52.1 9.6e-215 743.4
Bma12g00621 BCT 208 941 NLP Transcription Factor Family AT1G64530 51.3 2.5e-191 665.6
Bma05g00891 BCT 254 968 NLP Transcription Factor Family AT4G24020 54.2 3.1e-197 685.3
Bma12g00621 BCT 287 941 NLP Transcription Factor Family AT4G24020 51.7 6.4e-171 597.8
Bma02g00962 BCT 152 923 NLP Transcription Factor Family AT3G59580 53.0 5.6e-207 718.0
Bma06g01446 BCT 94 227 NLP Transcription Factor Family AT3G59580 65.7 6.3e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57348 PF00564 PB1 9.60E-17 CL0072 Bma TF