Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00892 ATGCCGGGTTTAGTTTCAGTCAAAACTCCGCCTGAAGCTCCACCTCTCCGGATCTCCGTCCCAAACACTCCGACTCAGATCCAGAGATCGGATCCTGCTAACAGCAAGCCTCCATCTCCCCTAGCCAGAAAACAAATCTCCCCATCTCCTTCCCGATCCAAGCCGTCGCCGGATCGGCAGAAGAAGCCACAACCCGAAAGCCCAGTCCCCAGCCCCGCCCCACCTGATTCCTCCCTCGACAATCCGGATCTCGGACCCTTCCTGCTCAAGCTAGCCCGCGACACTATCGCTTCAGGGGAAGGCCCGAACAAAGCACTAGACTATGCGATCAGGGCCTCTAAAAAGGGAGACTACGAGACAGCACTCGAGCACCTCGTCCTGGCCAGCATGGCAATGATTTCCAATGGACAAGACAATGAAGTTGCTGCCATTGATGTCAGCATTGGAAACATTTACATGTCTCTCTGTCGCTTTGACGAGGCTGTCTTTTCCTACCAGAAGGCTCTAACTGTCTTCAAAGCATCGAAAGGCGATAACCACCCTTCAGTTGGCTCCGTTTTCATCCGCCTTGCTGATATATATCACAAGACTGGAAAGCTTCGAGAATCGAAATCATATTGTGAAAATGCTTTGAGGATTTATTCGAAGCCAGTGCCTGGAACTACGTCTGAAGAAATCGCCGGTGGGTTGACTGAAATATCGGCTATTTATGAGTCTGTTGATGAGCCCGATGAGGCATTGAAGCTTTTGCAAAAGGCGATGAAGCTGTTAGAGGATAAACCGGGACAGCAAAGCACGATTGCTGGGATTGAAGCTCGGATAGGAGTAATGTTTTACATGGTTGGGAGGTATGAAGATGCAAGGAACTCTTTCGAGAGCTCCATAGCAAAACTCAGATCCAGTGGGGAGAGAAAATCAGCCTTCTTTGGGGTTGTGTTAAATCAAATGGGATTGGCTTCTGTGCAGCTTTTCAAGATAGATGAAGCTGCCGAGCTTTTTGAAGAAGCGAGGGGAATCCTGGAACAAGAGTGCGGCCCCTGTCATCAGGACACTCTTGGAGTTTACAGCAATCTTGCAGCCACCTATGATGCTATGGGGAGGGTAGGGGACGCAATCGAAATACTGGAGCATGTTCTTAAATTGAGAGAAGAAAAGCTCGGAATTGCAAATCCAGATTTCGAAGATGAGAAGAGAAGGTTAGAAGAGCTGCTGAAAGAAGCAGGCAGAACCAGAGACAGAAAAGCGAAATCCCTCGAAAACCTCATCGACCCAAACTCGAAGAAGACGACAAAGAAAGAGGTAACAAAGAAGTGGTCTGGCTTAGGCTTTAGAATTTGA 1338 48.8 MPGLVSVKTPPEAPPLRISVPNTPTQIQRSDPANSKPPSPLARKQISPSPSRSKPSPDRQKKPQPESPVPSPAPPDSSLDNPDLGPFLLKLARDTIASGEGPNKALDYAIRASKKGDYETALEHLVLASMAMISNGQDNEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPSVGSVFIRLADIYHKTGKLRESKSYCENALRIYSKPVPGTTSEEIAGGLTEISAIYESVDEPDEALKLLQKAMKLLEDKPGQQSTIAGIEARIGVMFYMVGRYEDARNSFESSIAKLRSSGERKSAFFGVVLNQMGLASVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEHVLKLREEKLGIANPDFEDEKRRLEELLKEAGRTRDRKAKSLENLIDPNSKKTTKKEVTKKWSGLGFRI 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46717305 46720266 - Bma022010.2 Bma05g00892 82976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00892 445 SMART tpr_5 310 343 IPR019734 GO:0005515
Bma05g00892 445 SMART tpr_5 352 385 IPR019734 GO:0005515
Bma05g00892 445 SMART tpr_5 268 301 IPR019734 GO:0005515
Bma05g00892 445 SMART tpr_5 227 260 IPR019734 GO:0005515
Bma05g00892 445 SMART tpr_5 184 217 IPR019734 GO:0005515
Bma05g00892 445 SMART tpr_5 142 175 IPR019734 GO:0005515
Bma05g00892 445 MobiDBLite consensus disorder prediction 62 79 - -
Bma05g00892 445 MobiDBLite consensus disorder prediction 19 54 - -
Bma05g00892 445 SUPERFAMILY TPR-like 146 382 IPR011990 GO:0005515
Bma05g00892 445 Gene3D Tetratricopeptide repeat domain 312 439 IPR011990 GO:0005515
Bma05g00892 445 Gene3D Tetratricopeptide repeat domain 125 310 IPR011990 GO:0005515
Bma05g00892 445 MobiDBLite consensus disorder prediction 410 434 - -
Bma05g00892 445 Coils Coil 390 413 - -
Bma05g00892 445 MobiDBLite consensus disorder prediction 1 85 - -
Bma05g00892 445 Pfam Tetratricopeptide repeat 312 384 - -
Bma05g00892 445 Pfam Tetratricopeptide repeat 141 215 - -
Bma05g00892 445 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 115 444 - -
Bma05g00892 445 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 114 - -
Bma05g00892 445 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
Bma05g00892 445 PANTHER - 115 444 - -
Bma05g00892 445 PANTHER - 1 114 - -
Bma05g00892 445 ProSiteProfiles TPR repeat profile. 142 175 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00892 - - - csv:101207194 575.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00892 Bma12g00623 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00892 Bma-Chr5:46717305 Bma06g00233 Bma-Chr6:2978589 4.04E-22 dispersed
Bma12g00623 Bma-Chr12:27479182 Bma05g00892 Bma-Chr5:46717305 4.76E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00892 Bma_Chr05 FPKM 13.885439 15.257165 14.114952 12.469752 12.125433 11.783388 13.377025 15.847692 15.801037 15.796939