Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00893 ATGCCCCAAGAAGAGGGGATCACGCTTCGTCGAAACTTATCTAGAAGGCGTTCCTTTCGATTTGAGGTCGTTGATAGGGATGACAGAGGATGGACGGTTCTTCACATTGGTGCTCGAAAGGGTAATGTCAAAGAGGTGAAACGACTTCTTGATGAAGGAATGAACGTGAATGTGATAACATGGGGCCCCAAATCAAAAGGGGCAACTCCTCTACACCTTGCTGCTGAGGGAGGCCACCTTAAAGTTATGGATGTACTGCTCGAACGAGGGGCTGACATTGATGCTAGAACCAAGGGTGCCTGTGGTTGGACGCCGCTTCATAATGCAGCGAAAGAAAGGAGGAGAGAAGCTGTGAAATTCCTGATAGAGAACGGGGCATTCCTGCCAGATGATATAAATGATTGCAGATTCAATCCACCACTCCACTACTGTCCTGGTCTTGAGTGGGCTTATGAGGAAATGAAACGCCTCCAACAAGAGAGCTTATCGGCCGAGGAAACATCTTACAGCTCTGATAGCTAA 522 48.08 MPQEEGITLRRNLSRRRSFRFEVVDRDDRGWTVLHIGARKGNVKEVKRLLDEGMNVNVITWGPKSKGATPLHLAAEGGHLKVMDVLLERGADIDARTKGACGWTPLHNAAKERRREAVKFLIENGAFLPDDINDCRFNPPLHYCPGLEWAYEEMKRLQQESLSAEETSYSSDS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46723429 46724368 - Bma022011.1 Bma05g00893 82977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00893 173 SMART ANK_2a 66 95 IPR002110 GO:0005515
Bma05g00893 173 SMART ANK_2a 101 134 IPR002110 GO:0005515
Bma05g00893 173 SMART ANK_2a 29 58 IPR002110 GO:0005515
Bma05g00893 173 Pfam Ankyrin repeats (many copies) 69 122 IPR002110 GO:0005515
Bma05g00893 173 SUPERFAMILY Ankyrin repeat 26 144 IPR036770 -
Bma05g00893 173 Pfam Ankyrin repeat 30 58 IPR002110 GO:0005515
Bma05g00893 173 Coils Coil 147 167 - -
Bma05g00893 173 PRINTS Ankyrin repeat signature 82 96 IPR002110 GO:0005515
Bma05g00893 173 PRINTS Ankyrin repeat signature 30 45 IPR002110 GO:0005515
Bma05g00893 173 ProSiteProfiles Ankyrin repeat region circular profile. 29 58 - -
Bma05g00893 173 ProSiteProfiles Ankyrin repeat profile. 101 126 IPR002110 GO:0005515
Bma05g00893 173 Gene3D - 11 157 IPR036770 -
Bma05g00893 173 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
Bma05g00893 173 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 5 172 - -
Bma05g00893 173 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Bma05g00893 173 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 5 172 - -
Bma05g00893 173 ProSiteProfiles Ankyrin repeat region circular profile. 101 126 - -
Bma05g00893 173 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00893 - - - csv:101206715 295.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00893 Bma-Chr5:46723429 Bma15g00137 Bma-Chr15:1466216 1.52E-10 dispersed
Bma05g00893 Bma-Chr5:46723429 Bma13g00036 Bma-Chr13:438643 2.24E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005963 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00893 Bma_Chr05 FPKM 3.153874 5.047542 3.167204 3.677648 2.747096 3.675363 2.798935 5.177108 4.138363 4.657897