Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00899 ATGGGATCTAGTGGAAGTAAAGGTAAGGGGCTGAGCTGTGCTTCTTCATCCAACTCTTCTCCTAGAAAGTCTCGGAGGGGTTTGTCTAAGGTGCACCGGGTTTTTCAATCTTCTTGCCTCCCTACTCTCTCTGGATCTTTCGAGAGCCACGATGGCGATCGGGGGAAAGAAAATGAGGGAGATGCTTCATTTAGTGAAACTCAAACAGAGAGAGGACAGATGAAATTTGATGGTTATGGAAAGGTCAAACTTGAAAGATCTGCTGAAAGGCCGTACTTATCAGCTGATGTTGAGTTAGATGAATGGGATCCAGGAAGTCTCACTCATGCAGCCCCTAGAGCTGGTAGCGACTCAGCCCAAGCGTCATCCGCTCAGTCACTGAACCCATCAAGTCGTTTTCTTTCTCGCTTTAAGCGCATACCTGGTAGTCTTAGCTTTAGACTAACCAGAGCCACCAGTTTAGGATCTTCAAGTCCCTATCCAGTTTCTTCAACAAGTCTCCCAATCTTGGACAATGAAGATGAGCTTCATTTACAGCCTGGACATGTTAGAGGGTTGATCAGTCGAGACGAAACTGGGGGACATTGTGGCATGCTTCTTTCATCGCAACTTGATGAAACTCCGATGCAATGTTATGGAGATGGCACAGCTGACTTTAGGTTACATATGAGGGAATTTGGAATTTCTGATTGCACACCATATGATGAAACAATTACTTCTCCACATGACCAAGCTACAAATGCTGATTTTGCAGAAGCAAGAGCCCTTGACTTGGCCGCATGCGTTGATAATCCAGAGAGGACTAGCGCAAACATTTACTCCCCTATAATCAATAATGGATCTGAAAATGCTGAGTCTAGACTGCCTGATTGGCAGTGTGGAAGTAGAGAACCAATTGAAAGAAATTCCCGTTTCAGCCGAACACTAAGTGTTGGAAGACTTCGAGACAGGGTTCTGCGTAGATCATCATTGTCGGGCTCAACATTATATCCTTTCCAACAAGAGAGAGAAGAGAGAGACGGAAGCCACAGCAGTGGTAGGGAAGCCAGGAATGTTGAGGGAATGGCATCAACGCTTGAAAGTAGTGAATTAACCACTTCAACTACATTGGGTTATTGCCCTCCCGATTTGTCTAGCTCTTTTTTCAGCATCCAAGATTATGAGGTTCAGACTACACGACCAAGAGAATCCAGATATCATGATCTGCTGGAGCATAGGTCTAACTTCCTTGAAAGGAGGAGAAGGATACGCTCCCAGGTCCGTGCTCTTCAGCGCTTGGGAAGCCGATTTGAAAACCTACCTGAACATGAAAGAGTTCTGGATGAAATTCACCAGCAATCTGTAGTTCTATCTTCCCGGCCTTCAGTATCAGTAATTGGATCTATTCCTGCACCAAACCAAGTTGTGGATTCTTTACCCATCAAATTATACTCTAAGTTGCACAAACATCAAAATGAGGAGGTCGCCCTGTGTTATATATGTCTTGTAGAGTATGAGGAAGGAGATAGCATGAGAATACTTCCTTGCCATCACGAATTTCATAAATCATGCGTAGACAAGTGGCTCAAGGAGATTCATAGGTACGAACTTCATAAAACCCGTAGACATGATTTGTTGTGTTTTCTTTTAGCAATTTTCCGGGCTACTGTGGCTTCGTCATAA 1662 44.34 MGSSGSKGKGLSCASSSNSSPRKSRRGLSKVHRVFQSSCLPTLSGSFESHDGDRGKENEGDASFSETQTERGQMKFDGYGKVKLERSAERPYLSADVELDEWDPGSLTHAAPRAGSDSAQASSAQSLNPSSRFLSRFKRIPGSLSFRLTRATSLGSSSPYPVSSTSLPILDNEDELHLQPGHVRGLISRDETGGHCGMLLSSQLDETPMQCYGDGTADFRLHMREFGISDCTPYDETITSPHDQATNADFAEARALDLAACVDNPERTSANIYSPIINNGSENAESRLPDWQCGSREPIERNSRFSRTLSVGRLRDRVLRRSSLSGSTLYPFQQEREERDGSHSSGREARNVEGMASTLESSELTTSTTLGYCPPDLSSSFFSIQDYEVQTTRPRESRYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLPEHERVLDEIHQQSVVLSSRPSVSVIGSIPAPNQVVDSLPIKLYSKLHKHQNEEVALCYICLVEYEEGDSMRILPCHHEFHKSCVDKWLKEIHRYELHKTRRHDLLCFLLAIFRATVASS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46831715 46834677 + Bma022018.1 Bma05g00899 82983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00899 553 MobiDBLite consensus disorder prediction 113 127 - -
Bma05g00899 553 SUPERFAMILY RING/U-box 468 525 - -
Bma05g00899 553 Pfam Ring finger domain 491 524 IPR001841 -
Bma05g00899 553 MobiDBLite consensus disorder prediction 49 64 - -
Bma05g00899 553 MobiDBLite consensus disorder prediction 329 359 - -
Bma05g00899 553 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 438 - -
Bma05g00899 553 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 439 528 - -
Bma05g00899 553 MobiDBLite consensus disorder prediction 1 24 - -
Bma05g00899 553 MobiDBLite consensus disorder prediction 1 78 - -
Bma05g00899 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 532 IPR013083 -
Bma05g00899 553 CDD RING-H2_PA-TM-RING 491 524 - -
Bma05g00899 553 SMART ring_2 491 543 IPR001841 -
Bma05g00899 553 ProSiteProfiles Zinc finger RING-type profile. 491 540 IPR001841 -
Bma05g00899 553 MobiDBLite consensus disorder prediction 103 127 - -
Bma05g00899 553 MobiDBLite consensus disorder prediction 333 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00899 - - - qsu:112035309 457.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00899 Bma-Chr5:46831715 Bma04g01365 Bma-Chr4:46866419 1.69E-09 dispersed
Bma05g00899 Bma-Chr5:46831715 Bma01g01300 Bma-Chr1:17778344 5.47E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g939 . . . . Bpe05g00717 Bpe07g00050 . . . Cmo16g00558 . . . . . Cpe14g00432 . . . . . . . . . . . . . . . . . Cone6ag0884 Cone9ag0888 . . . . . . . . . . Bma05g00899 . . . . . Cma16g00511 . . Cpe01g00536 . . . . . . . . . . . . . . . . Csa04g00707 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005159 0 4 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00899 Bma_Chr05 FPKM 9.740139 9.038869 6.122687 5.790558 9.78606 10.482226 12.834073 7.255257 8.349873 9.72485