Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00910 ATGCAGGAGAAGGATTGGCTTTCGTTGGTTGCTGTTCATAGTGATTCATGGTTGCTAGCTGTTGCATTTTATTTTGGTGCACGCTTCGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACTATATTTGAAGTGGTGACAGGGAACGTTAAGCATCCTAAGGAGCAGGTTGCTACTCACAATAACAGCAGCAAAAGCAAATCAAGTGGGAAAATGCAATCTCGCCAATCTGAGCCACAGAACAAGGGAGTAAAGATGTCTCCACTCCCCAAAGAAGATGACGACAGTGGGGAGGAGGAAGAAGATGATGAGCAGGGGGCGACATGTGGTGCGTGTGGCGATAACTACGGAAATGATGAGTTTTGGATTTGTTGCGATATTTGCGAAAGATGGTTCCACGGGAAATGTGTTAAGATTACGCCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 510 44.9 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKHPKEQVATHNNSSKSKSSGKMQSRQSEPQNKGVKMSPLPKEDDDSGEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47011904 47014925 + Bma022032.1 Bma05g00910 82994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00910 169 MobiDBLite consensus disorder prediction 61 90 - -
Bma05g00910 169 ProSiteProfiles Zinc finger PHD-type profile. 113 165 IPR019787 -
Bma05g00910 169 MobiDBLite consensus disorder prediction 100 114 - -
Bma05g00910 169 PANTHER CPG BINDING PROTEIN 1 169 IPR045104 GO:0006355|GO:0042393
Bma05g00910 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 164 IPR013083 -
Bma05g00910 169 SMART PHD_3 115 163 IPR001965 -
Bma05g00910 169 CDD PHD_AL_plant 116 165 IPR044104 -
Bma05g00910 169 Pfam PHD-finger 116 165 IPR019787 -
Bma05g00910 169 Pfam Alfin 1 55 IPR021998 GO:0006355|GO:0042393
Bma05g00910 169 ProSitePatterns Zinc finger PHD-type signature. 116 162 IPR019786 -
Bma05g00910 169 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 1 169 - -
Bma05g00910 169 MobiDBLite consensus disorder prediction 60 115 - -
Bma05g00910 169 SUPERFAMILY FYVE/PHD zinc finger 105 166 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00910 Bma-Chr5:47011904 Bma02g00545 Bma-Chr2:11058348 2.71E-71 dispersed
Bma12g00038 Bma-Chr12:934886 Bma05g00910 Bma-Chr5:47011904 1.89E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57349 PF12165 Alfin 7.50E-23 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00910 - - jre:109002420 309.301