Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00910 | ATGCAGGAGAAGGATTGGCTTTCGTTGGTTGCTGTTCATAGTGATTCATGGTTGCTAGCTGTTGCATTTTATTTTGGTGCACGCTTCGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACTATATTTGAAGTGGTGACAGGGAACGTTAAGCATCCTAAGGAGCAGGTTGCTACTCACAATAACAGCAGCAAAAGCAAATCAAGTGGGAAAATGCAATCTCGCCAATCTGAGCCACAGAACAAGGGAGTAAAGATGTCTCCACTCCCCAAAGAAGATGACGACAGTGGGGAGGAGGAAGAAGATGATGAGCAGGGGGCGACATGTGGTGCGTGTGGCGATAACTACGGAAATGATGAGTTTTGGATTTGTTGCGATATTTGCGAAAGATGGTTCCACGGGAAATGTGTTAAGATTACGCCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA | 510 | 44.9 | MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKHPKEQVATHNNSSKSKSSGKMQSRQSEPQNKGVKMSPLPKEDDDSGEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 47011904 | 47014925 | + | Bma022032.1 | Bma05g00910 | 82994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00910 | 169 | MobiDBLite | consensus disorder prediction | 61 | 90 | - | - | |
Bma05g00910 | 169 | ProSiteProfiles | Zinc finger PHD-type profile. | 113 | 165 | IPR019787 | - | |
Bma05g00910 | 169 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Bma05g00910 | 169 | PANTHER | CPG BINDING PROTEIN | 1 | 169 | IPR045104 | GO:0006355|GO:0042393 | |
Bma05g00910 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 164 | IPR013083 | - | |
Bma05g00910 | 169 | SMART | PHD_3 | 115 | 163 | IPR001965 | - | |
Bma05g00910 | 169 | CDD | PHD_AL_plant | 116 | 165 | IPR044104 | - | |
Bma05g00910 | 169 | Pfam | PHD-finger | 116 | 165 | IPR019787 | - | |
Bma05g00910 | 169 | Pfam | Alfin | 1 | 55 | IPR021998 | GO:0006355|GO:0042393 | |
Bma05g00910 | 169 | ProSitePatterns | Zinc finger PHD-type signature. | 116 | 162 | IPR019786 | - | |
Bma05g00910 | 169 | PANTHER | ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED | 1 | 169 | - | - | |
Bma05g00910 | 169 | MobiDBLite | consensus disorder prediction | 60 | 115 | - | - | |
Bma05g00910 | 169 | SUPERFAMILY | FYVE/PHD zinc finger | 105 | 166 | IPR011011 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00910 | Bma-Chr5:47011904 | Bma02g00545 | Bma-Chr2:11058348 | 2.71E-71 | dispersed | |
Bma12g00038 | Bma-Chr12:934886 | Bma05g00910 | Bma-Chr5:47011904 | 1.89E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57349 | PF12165 | Alfin | 7.50E-23 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00910 | - | - | jre:109002420 | 309.301 |