Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00915 ATGCTCAAGATGAAGGAGCCTCTCCTTACTAAAGCTAACAGGATCAATACTACCTCTCAACTGGCCATTGTTGGCGCCAATGTTTGCCCCATCGAAAGCCTCGACTACGAGATCGCTGAGAATGATCTTTTCAAGCAGGACTGGAGATCAAGAACAAAGACAGAGATTTTTCAATATGTTGTCCTCAAATGGACCCTTGCCCTGCTGATTGGTGTAGGCACTGGCCTTGTTGGCTTCTTCAATAACCTTGCTGTTGAAAACATAGCTGGGTTCAAACTTCTACTCAGTAACAACCTCATGCTTCAGCACAAGTTTTTTCAGGCATTTGTAGCCCTTGCTAGTTGCAACATGGTTTTGGCCATAGCTGCTTCAGCACTTTGTGCCTACATTGCTCCTGCAGCTGCTGGCTCTGGCATACCTGAAGTAAAAGCATACCTCAACGGAGTAGATGCTCATTCCATTTTGGCTCCGGCTACACTCTTTGTAAAGATATTTGGTTCCATATTTGGTGTTGCTGCTGGATTTGTTGTGGGTAAGGAAGGACCTATGGTACACACTGGTGCATGCATTGCCAATTTACTTGGACAAGGAGGCTCCCGCAAATATCACTTAACTTGGAAGTGGCTCAGGTACTTCAAAAATGATAGGGACAGGCGGGATCTGATCACCTGCGGTGCTGCTGCTGGAGTAGCGGCTGCCTTCCGTGCCCCAGTTGGTGGAGTTCTCTTCGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTTTGGAGAACCTTCTTTACCACTGCCGTAGTAGCAGTTGTGTTGAGAGGTTTCATCGTGTTTTGCCGGGGTGGAAAATGTGGACTTTTTGGTGAAGGAGGTCTTATTATGTTTGATGTCAATTCAGAACAAGTTTCTTACAGCACCCCGGATTTACTGGCAGTGGTGTTCCTTGGCGTTCTTGGTGGTGTCTTTGGAAGTCTTTACAATTATTTCGTCGACAAGGTTCTCCGCACTTATAGCATCATCAACGAGAAAGGTCCTTCCATGAAAATTCTACTTGTCGTTGCCATTTCTCTACTGACTTCTTGTTGCTCTTATGGACTTCCATGGTTCTCCATGTGCATTCCTTGCCCTGCTCACTTGGAGGATCAGTGTCCGACTGTAGGTCGCACCGGTAACTACAAGGAATTTCAATGTCCTCCTAACCATTACAATGACCTTGCTTCCCTTTTACTCAACACCAACGACGATGCAATTCGCAACCTGTTGAGCCCTGGTTCCGATAAGGAGTTTCACTTCTCTACCCTTGTAGTTTTCTTTGCTGCCATCTACCTTCTCGGAATTATCACTTACGGAATAGCTATTCCCTCTGGCCTTTTCATTCCTGTAATACTTGCCGGAGCATCATACGGCCGCCTTGTGGGGACACTCGTTGGCTCTCTATCAAATCTTGATGTGGGTCTCTTTGCTCTCCTCGGAGCTGCTTCTTTTCTCGGCGGGACCATGCGAATGACTGTTTCTCTCTGTGTCATCCTTCTTGAACTTACCAATGATCTATTGATGCTACCATTGGTTATGCTTGTTCTTCTGATTTCGAAAACTGTGGCAGACTGTTTCAACAAAGGTGTCTATGATCAAATTGTCAAGATGAAGGGGCTGCCATACTTGGAAGCTCATGCAGAGCCATATATGAGACACTTGGTTGCAAGTGATGTTGTGTCTGGCCCGCTGATTACATTCTCCGGAGTAGAAAAAGTCGGAACCATAATGTATGCTTTGAAGATGACAAATCATAATGGATTCCCCGTTATCGACGAGCCTCCATTCACGGAAGCTCCAGAGCTGTGCGGGCTTGTTCTGAAGTCTCATCTTCTTGTTTTGCTCAAAGGGAAGAAATTCACAAAGCAGAAAGTGAGTACTGGATCGACAATCATCCGGAGTTTCAAAGCTCACGATTTTGCTAAAGCGGGATCGGGCAAGGGGATGAAGCTGGAGGACTTGGATATCAAAGATGATGAGATGGAGATGTATGTAGATCTTCATCCTATTACTAATACATCCCCCTACACTGTAGTGGAAACAGTGTCTCTGGCTAAAGCGGCTATTCTCTTCCGGGAACTTGGCCTTCGCCACTTGATGGTCGTGCCGAAGACACCAGGGAGGCCTCCGATTGTCGGAATCCTTACCCGACACGACTTCATGCCGGAGCATGTGTTAGGACTTTACCCACATTTCAATCCTCATAAGTAG 2241 46.45 MLKMKEPLLTKANRINTTSQLAIVGANVCPIESLDYEIAENDLFKQDWRSRTKTEIFQYVVLKWTLALLIGVGTGLVGFFNNLAVENIAGFKLLLSNNLMLQHKFFQAFVALASCNMVLAIAASALCAYIAPAAAGSGIPEVKAYLNGVDAHSILAPATLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIVFCRGGKCGLFGEGGLIMFDVNSEQVSYSTPDLLAVVFLGVLGGVFGSLYNYFVDKVLRTYSIINEKGPSMKILLVVAISLLTSCCSYGLPWFSMCIPCPAHLEDQCPTVGRTGNYKEFQCPPNHYNDLASLLLNTNDDAIRNLLSPGSDKEFHFSTLVVFFAAIYLLGIITYGIAIPSGLFIPVILAGASYGRLVGTLVGSLSNLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADCFNKGVYDQIVKMKGLPYLEAHAEPYMRHLVASDVVSGPLITFSGVEKVGTIMYALKMTNHNGFPVIDEPPFTEAPELCGLVLKSHLLVLLKGKKFTKQKVSTGSTIIRSFKAHDFAKAGSGKGMKLEDLDIKDDEMEMYVDLHPITNTSPYTVVETVSLAKAAILFRELGLRHLMVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHFNPHK 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47078947 47083700 - Bma022038.1 Bma05g00915 82999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00915 746 Gene3D - 554 736 IPR046342 -
Bma05g00915 746 SUPERFAMILY Clc chloride channel 41 556 IPR014743 -
Bma05g00915 746 PRINTS Chloride channel signature 227 246 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 163 182 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 540 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 132 149 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 502 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 452 472 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Chloride channel signature 484 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 ProSiteProfiles CBS domain profile. 680 744 IPR000644 -
Bma05g00915 746 SUPERFAMILY CBS-domain pair 557 731 IPR046342 -
Bma05g00915 746 CDD CBS_pair_voltage-gated_CLC_euk_bac 566 733 - -
Bma05g00915 746 Pfam CBS domain 682 730 IPR000644 -
Bma05g00915 746 Pfam Voltage gated chloride channel 120 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma05g00915 746 PRINTS Plant CLC chloride channel signature 262 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma05g00915 746 PRINTS Plant CLC chloride channel signature 37 45 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma05g00915 746 PRINTS Plant CLC chloride channel signature 248 256 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma05g00915 746 PRINTS Plant CLC chloride channel signature 280 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma05g00915 746 PRINTS Plant CLC chloride channel signature 404 420 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma05g00915 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 746 - -
Bma05g00915 746 Gene3D Clc chloride channel 55 553 - -
Bma05g00915 746 SMART cbs_1 573 626 IPR000644 -
Bma05g00915 746 SMART cbs_1 684 735 IPR000644 -
Bma05g00915 746 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 4 746 - -
Bma05g00915 746 CDD ClC_6_like 32 553 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00792 Bma05g00915 BCT
Bma05g00915 Bma12g00031 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00307 Bma-Chr1:2527778 Bma05g00915 Bma-Chr5:47078947 0 transposed
Bma04g00792 Bma-Chr4:9004903 Bma05g00915 Bma-Chr5:47078947 1.18E-11 transposed
Bma14g01376 Bma-Chr14:25654138 Bma05g00915 Bma-Chr5:47078947 0 transposed
Bma12g00031 Bma-Chr12:877510 Bma05g00915 Bma-Chr5:47078947 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00915 K05016 - jre:108988922 1247.65