Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00920 ATGTTCTTTGCGATTTTTATAATTTGTTTATCGGGCATTTGCGTTGTGGATTTGGTTTGTGCCTTGTTTACAGATCTGATATCGGAGCGAAACGTTTTTCCGTCAGCAATGGCCCTAGTCTTGCATGCAGGAAAGACAAATAAAAATAGTTTTAAGACCCTCATTGCTGCAGAGTATGTTGGTGTTCAAGTTGAACTCGCCTCAAATTTTGAGATGGGTGTTTCAAATAAAACTCCAGAATTTATTAAGATGAACCCTATTGGGAAGGTCCCTGTGCTGGAGACGCCTGATGGTTCCATATTTGAGAGCAATGCCATTGCACGATACGTTTCTCACTTGAAGACTGAATGCAATCTATTTGGCTCTTCTCTTATTGATTATGGCCATGTTGAACAGTGGATTGATTTTGCATCATTAGAGATTGATGTTCACATTCTGACTTGGTTTAGACCAAGAAGGGGTTTCGCTCCATACCTTCCTCCTGTTGAGGAAGCTGCTATTACTGCGTTGAAGAGAGCGTTGGGTGCTTTGAACTTTCACCTTGCTTCAAACACATATCTTGTGGGGAACTCTGTGACGCTGGCTGACATCATAATGACATGTAACTTGTATTTGGGTTTCACTCAGTTAATGACCAAGAGCTTTACCTCTGAGTTCCCTCACGTTGAGAGATACTTCTGGACCTTGGTCAATCAACCAAACTTCAAAAAGATAATTGGTGAAGTTAAGCAAACTGAGTCTGTTCCACCAATTCAATCTGTGAAAAAGCCTTCCCAGCCTAAAGAACCTGTTAAGCCAAAGCCTAAGGATGAGCCGAAGAAAGAAGTTAAGAAAGAAGAGGCAAAGGAAAAGCCCAAGGTGGAAGCTGGTGAAGAAGAAGAAGAGGCGCCAAAACCAAAGCCCAAAAATCCCCTTGATCTATTGCCTCCCAGTCCAATGATTCTGGATGAATGGAAACGGCTTTACTCTAACACAAAGACAAACTTTCGCGAGGTTGCAATTAAAGGATTCTGGGACATGTATGATCCTGAGGGTTATTCTCTTTGGTTCTGTGATTACAAGTACAACGATGAGAATACTGTTTCATTCGTAACACTTAACAAAGTTGGTGGATTTCTGCAACGCATGGATCTAGCCCGAAAGTATGCATTTGGGAAGATGCTCGTGATTGGTTCAGAAGCACCATTTAAAGTGAAAGGGCTATGGCTTTTCCGCGGCAAAGAGATACCACAATTTGTGATCGACGAGTGCTACGATATGGAACTTTACGAATGGACAAAGGTGGATATCTCTGACGAAGCCCAGAAGGAGCGCGTGAGCCAGATGATCGAAGATCACGAGCCATTTGAGGGAGATGCTCTTTTGGATGCAAAATGTTTCAAGTGA 1386 42.42 MFFAIFIICLSGICVVDLVCALFTDLISERNVFPSAMALVLHAGKTNKNSFKTLIAAEYVGVQVELASNFEMGVSNKTPEFIKMNPIGKVPVLETPDGSIFESNAIARYVSHLKTECNLFGSSLIDYGHVEQWIDFASLEIDVHILTWFRPRRGFAPYLPPVEEAAITALKRALGALNFHLASNTYLVGNSVTLADIIMTCNLYLGFTQLMTKSFTSEFPHVERYFWTLVNQPNFKKIIGEVKQTESVPPIQSVKKPSQPKEPVKPKPKDEPKKEVKKEEAKEKPKVEAGEEEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGKEIPQFVIDECYDMELYEWTKVDISDEAQKERVSQMIEDHEPFEGDALLDAKCFK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47112617 47115302 + Bma022044.1 Bma05g00920 83004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00920 461 MobiDBLite consensus disorder prediction 249 309 - -
Bma05g00920 461 SUPERFAMILY GST C-terminal domain-like 118 250 IPR036282 -
Bma05g00920 461 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 301 461 IPR001662 GO:0003746|GO:0006414
Bma05g00920 461 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 123 251 IPR010987 -
Bma05g00920 461 Pfam Glutathione S-transferase, N-terminal domain 46 111 IPR004045 -
Bma05g00920 461 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 301 461 IPR036433 GO:0003746|GO:0006414
Bma05g00920 461 PANTHER - 37 461 - -
Bma05g00920 461 CDD GST_C_EF1Bgamma_like 126 246 - -
Bma05g00920 461 SFLD Glutathione Transferase (cytosolic) 40 226 IPR040079 -
Bma05g00920 461 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 37 461 IPR044628 GO:0004364
Bma05g00920 461 Pfam Elongation factor 1 gamma, conserved domain 300 408 IPR001662 GO:0003746|GO:0006414
Bma05g00920 461 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 37 118 IPR004045 -
Bma05g00920 461 Gene3D Glutaredoxin 36 110 - -
Bma05g00920 461 SUPERFAMILY Thioredoxin-like 35 117 IPR036249 -
Bma05g00920 461 SFLD Main (cytGST) 40 226 - -
Bma05g00920 461 MobiDBLite consensus disorder prediction 260 301 - -
Bma05g00920 461 SUPERFAMILY eEF1-gamma domain 301 461 IPR036433 GO:0003746|GO:0006414
Bma05g00920 461 Pfam Glutathione S-transferase, C-terminal domain 162 233 IPR004046 -
Bma05g00920 461 Gene3D - 117 252 - -
Bma05g00920 461 SMART EF1G_2 300 408 IPR001662 GO:0003746|GO:0006414
Bma05g00920 461 CDD GST_N_EF1Bgamma 39 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00920 Bma-Chr5:47112617 Bma14g01123 Bma-Chr14:14207084 1.75E-12 dispersed
Bma12g00028 Bma-Chr12:841934 Bma05g00920 Bma-Chr5:47112617 1.24E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00920 K03233 - zju:107412556 680.248