Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00922 ATGGCTTCTGCAAGCCTGGGAAATAGAGGAGTGGGAAGTTCCAGGTCTGTAAATGCCTTCAAAGGTTCATCTAGTTCGGTTGATTGGATTAGTAGAGAGATACTTGAAATGAGATTGAGCGACAAGGTGGATAATGACGACGACGGAGATAGCGAACCGGATATTATAGACGGTGTGGGTGCTGAAGCAGGTCATGTGATAAGGACTACAATTGGTGGTCGAAATGGTCAACCTAAGCAGACAGTCAGCTATATTGCAGAACACGTAGTTGGAACAGGCTCGTTTGGTGTTGTTTTCCAAGCGAAATGTAGAGAAACAGGAGAAATCGTCGCTATCAAGAAAGTTCTTCAAGACAAACGATACAAGAATAGGGAACTGCAGATTATGCAAATGCTGGACCACCCCAATGTTGTAGCCCTTAAACATTGTTTCTTTTCAACAACTGACAAAGAAGAGTTGTACCTTAATCTTGTTCTTGAATTTGTTCCTGCAACTGTTAATCGTATTGCAAGAAACTATAGTAGGATCAACCAGCGAATGCCCCTGATATATGTTAAACTTTATACCTATCAAATATGCAGGGCGCTTGCATATATACATAATTGCATCGGTATATGTCACCGGGATATCAAGCCACAGAACCTGCTTGTGAATCCACACACCCATCAGCTTAAACTTTGTGATTTTGGTAGTGCAAAAGTGCTTGTTAAAGGAGAGCTTAATGTTTCTTATATCTGCTCAAGATATTACCGAGCTCCGGAACTCATTTTTGGGGCCACTGAGTACACAACAGCCATTGATATATGGTCTACAGGATGTGTGATGGCTGAACTGCTTCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGACCAGCTAGTTGAAATTATTAAGGTTTTAGGGACACCGACTAGAGAGGAGATAAAGTGTATGAACCCAAATTACACCGAATTCAAGTTTCCACAGATAAAGCCTCACCCATGGCATAAGGTTTTTCAGAAGCGTTTACCGCCAGAGGCAGTGGACCTTGTGTGCCGATTTTTCCAGTATTCTCCAAATTTGCGGTGCACTGCTTTGGAAGCTTGTATCCATCCTTTCTTTGATGAGTTGAGGGACCCAAACACCCGTCTTCCGAACGGCCGCCCTCTTCCTCCTCTGTTTAATTTCAAACCTCAAGAGTTGACAGGCCTACAATCAGACGTCGTGAATCGACTTATTCCAGATCATGCCCGCAAGAAAAATTTGTTCATGGCACTGCACACCTGA 1269 43.26 MASASLGNRGVGSSRSVNAFKGSSSSVDWISREILEMRLSDKVDNDDDGDSEPDIIDGVGAEAGHVIRTTIGGRNGQPKQTVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNVVALKHCFFSTTDKEELYLNLVLEFVPATVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGELNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELTGLQSDVVNRLIPDHARKKNLFMALHT 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47122578 47126507 + Bma022046.1 Bma05g00922 83006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00922 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00922 422 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Bma05g00922 422 SUPERFAMILY Protein kinase-like (PK-like) 83 394 IPR011009 -
Bma05g00922 422 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 419 - -
Bma05g00922 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 419 - -
Bma05g00922 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Bma05g00922 422 CDD STKc_GSK3 79 371 IPR039192 -
Bma05g00922 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Bma05g00922 422 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Bma05g00922 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00922 422 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00922 Bma12g00028 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00752 Bma-Chr3:6876036 Bma05g00922 Bma-Chr5:47122578 0 dispersed
Bma05g00922 Bma-Chr5:47122578 Bma05g00973 Bma-Chr5:48175366 0 dispersed
Bma05g00922 Bma-Chr5:47122578 Bma12g00028 Bma-Chr12:841934 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66505 PF00069 Pkinase 2.70E-63 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00922 K03083 - jre:108983720 809.675