Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00929 ATGGAGGGAGCAAGCTATTATTCAATGGCTGTCTTCTTGGTTTTCTTCATTTCTCTATTCACTGCTATCTCACGCACCAATGGATATGATGCGTTGGATCCGCATGGCAATATAACTATCACGTGGGATTTCATGCTACAAAACGAAGAAACATACGATGTGAAAGTCTACATATACAACCTGCAACTATTCAGGAATGTAGAGCCGCCGGGATGGAAACTCAACTGGGAATGGAAAGGAGAAGAGGTGATTTGGAATATGAGGGGAGCAGAGGCCAGTCAGCAAGGAGACTGCTCCGAATACAGAGGGAGGCTAGAGCTGCCCCATTGTTGCCTGAGGAAACCCGCCGTCGTTGATTTAATGCCCGGAGCGCCCTTCAATCTTCAGGTTTCCAACTGCTGCAAAGCTGGGGTGCTGTCTTCAATGGCGCAAGATCCTTCCAGCTATGCTTCCGCCTTCCAGATGACAATCGAAATGCCTGCGGGAGGTAGATTTACGATGCCTGAGAATTTCAGTCTGGGTCTTCCTGGGTATAGCTGCGGATCTCCTTTTCGGGTCTCTCCGAGTAAGTTCAGCGCCGACGGGGGCCGCCGGTGGACTCAAGCTCTGGAGACCTGGAATGTGACCTGTATTTACTCACAATTCAGAGCATCATCTTCCCCAAAGTGCTGCGTCTCACTCTCTGCGTTTTACAACTCCACCATTCTTCCCTGTCCTCCCTGCAGTTGCGCCTGCCAAGGACTGGCGGGATCAACCTGCGTCGAAGCAGATGAAGCTCCTCCACTCCTGCAACTTCCACACAAAAATTCAAGTTTAGTGAGGTGTTCCCACCATATGTGCCCAGTAAGAGTCCACTGGCATATCAAAGAAAGCTACAAAGAATATTGGAGAGTGAAGATGACCATCACCAACCTTAATATCCTCAAGAATTACTCCATGTGGAACTTGGTCGTGCTTCACCCTAATCTGCAGAGCTTGACCCAAGTTTTCAGCTTCAATTACCGCCCTCTTATTCAGTACGGCGACATCAACGATACAGGCATGTTTTGGGGTATTCGATACTACAACGACCTGTTACTCGCCTATGGAGGAGATGGGAATGTTCAGACGGAGATGCTGCTGCACAAAGATGCCGGAATTTTCACTTTCCGGGAAGGCTGGGCTTTTCCGAGGAAAATTATATTCAACGGAGATGAATGCGTGATGCCTCCTCCAGACCAGTACCCCCGACTGCCCAATCAATCTCCTACCCATGCAGCTTCCACTTCTTTCCTTTCTATATTTATCGTTTCACTTTTTCTAACCATAAATCATATAAACTTCGTGCACATGTAA 1335 48.16 MEGASYYSMAVFLVFFISLFTAISRTNGYDALDPHGNITITWDFMLQNEETYDVKVYIYNLQLFRNVEPPGWKLNWEWKGEEVIWNMRGAEASQQGDCSEYRGRLELPHCCLRKPAVVDLMPGAPFNLQVSNCCKAGVLSSMAQDPSSYASAFQMTIEMPAGGRFTMPENFSLGLPGYSCGSPFRVSPSKFSADGGRRWTQALETWNVTCIYSQFRASSSPKCCVSLSAFYNSTILPCPPCSCACQGLAGSTCVEADEAPPLLQLPHKNSSLVRCSHHMCPVRVHWHIKESYKEYWRVKMTITNLNILKNYSMWNLVVLHPNLQSLTQVFSFNYRPLIQYGDINDTGMFWGIRYYNDLLLAYGGDGNVQTEMLLHKDAGIFTFREGWAFPRKIIFNGDECVMPPPDQYPRLPNQSPTHAASTSFLSIFIVSLFLTINHINFVHM 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47184372 47367499 + Bma031220 Bma05g00929 83013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00929 444 Pfam COBRA-like protein 52 213 IPR006918 GO:0010215|GO:0031225
Bma05g00929 444 PIRSF COBRA 4 441 IPR006918 GO:0010215|GO:0031225
Bma05g00929 444 PANTHER COBRA-LIKE PROTEIN 6 15 433 - -
Bma05g00929 444 PANTHER PROTEIN COBRA 15 433 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00053 Bma-Chr4:500036 Bma05g00929 Bma-Chr5:47184372 1.53E-21 dispersed
Bma05g00386 Bma-Chr5:12166793 Bma05g00929 Bma-Chr5:47184372 1.78E-11 dispersed
Bma05g00929 Bma-Chr5:47184372 Bma08g00250 Bma-Chr8:3113739 1.54E-159 dispersed
Bma13g01035 Bma-Chr13:42938329 Bma05g00929 Bma-Chr5:47184372 4.34E-38 dispersed
Bma05g00929 Bma-Chr5:47184372 Bma13g00189 Bma-Chr13:2230022 2.87E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00929 - - cmo:103496092 634.409