Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00938 ATGCTGGTGTTTTGCATATGTGGGATCATAGCAAGCACGGCGCTGGGTAAAGGAGAAGACCATCTTTTAGAATATGCTGTCACGGCTGGTTTGACTGTAGTCGTTGTGATTTTCTCAATCGGACCAATCTCCGGTGCTCATATTAACCCTGCTGTGACCCTGGCCTTCGCCATTTTTGGTTATTTTCCGTGGTCTAAGGTTTCGCCATACATTTTGGCTCAAACATTGGGATCAGTACTGGGAACGTACATTGGAAGCTGTGTTTATGGAGTAAAATCTGAACTTTTTACGACAAGATCAGTTCATAGCTCCATTTCTGCCTTCTGGGTAGAGCTCATTGCGACTTTTATAATCCTCTTTCTCATCACTTCTTTGAATCATGAAGCACGAATTGTTGGCCACGTATCTGGTTTTGTCATCGGAATATCCATTGGGCTCGGCGTGTTAATCACAGGGCCAGTTTCAGGAGGATCAATGAACCCAGCAAGATCTTTAGGACCTGCAATTCTTTCATGGAGTTTTAGAGACATTTGGGTTTACATTACTGCTCCTTTTCTTGGAGCGTTTCTCGGCTGTCTCTTGTCTCGTTTTCTTCGTCTGCGCCCCCATCTGAACACCTCTCTCGTCGGTTCGTTGGTCTTAAACAGCAGCTGA 654 45.11 MLVFCICGIIASTALGKGEDHLLEYAVTAGLTVVVVIFSIGPISGAHINPAVTLAFAIFGYFPWSKVSPYILAQTLGSVLGTYIGSCVYGVKSELFTTRSVHSSISAFWVELIATFIILFLITSLNHEARIVGHVSGFVIGISIGLGVLITGPVSGGSMNPARSLGPAILSWSFRDIWVYITAPFLGAFLGCLLSRFLRLRPHLNTSLVGSLVLNSS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47420375 47421302 - Bma022074.1 Bma05g00938 83022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00938 217 Gene3D Glycerol uptake facilitator protein. 1 205 IPR023271 -
Bma05g00938 217 PANTHER AQUAPORIN NIP7-1-RELATED 1 203 - -
Bma05g00938 217 Pfam Major intrinsic protein 20 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00938 217 PANTHER AQUAPORIN NIP2-1 1 203 IPR034294 -
Bma05g00938 217 SUPERFAMILY Aquaporin-like 1 200 IPR023271 -
Bma05g00938 217 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Bma05g00938 217 PRINTS Major intrinsic protein family signature 110 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00938 217 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00938 217 PRINTS Major intrinsic protein family signature 141 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00938 217 PRINTS Major intrinsic protein family signature 178 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma05g00938 217 PRINTS Major intrinsic protein family signature 29 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00938 K09874 NIP; aquaporin NIP - zju:107423284 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00938 Bma-Chr5:47420375 Bma07g01058 Bma-Chr7:42617601 4.27E-44 dispersed
Bma05g00930 Bma-Chr5:47301677 Bma05g00938 Bma-Chr5:47420375 9.51E-152 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g437 . . . . . . . Bma05g00938 . . . Cma14g01679 . Car14g01513 . . Cpe03g01417 Bhi01g00854 . . . . . Lcy11g1511 . . . . . . . . . . Cone4ag0210 Lsi05g01452 . . Cme06g00639 . . . . Bpe05g00748 . . . . . Cmo14g01724 . . . . . . . . . . . . . Cla05g00575 Cam05g0630 Cec05g0641 Cco05g0635 Clacu05g0626 Cmu05g0594 Cre05g0662 . Csa03g01364 Chy06g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010672 2 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00938 Bma_Chr05 FPKM 18.09951 18.851328 20.492393 20.712345 18.635317 19.553457 19.136385 12.3957 14.170699 13.522976