Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00939 ATGGCGGCCATTCCCCGAATCCCGGGCTCTATCTCCATCTTCTTCTTCATCTTTTCTTCATTTTCTCTCTCCAATGCACTTCCTTTGTCATCCAACCCCAAAGCTCTGTATCTCCCGGTTTCTAAAGACGCAACCACACTCCAGTACTCAACCAGATTCAGCGTCGGAACCCCTTTTCTCCCAGTCTCTCTTGTGCTTGATCTGGGAGGTCGATTAACATGGATCAACTGCGAAATCATTTCTAAATCCTCTTCTTACCGGCCAAGTCCTTGTGGCTCGCCGCCGTGTTTAACGGCCAAAGCTCCAGTCTGCGTCGACTTCTGTTTTTCAGGCCCCACCCCTGTTCCTGGCTGCAACAACAACACTTGCAATTTCTACGTTGAGAACAGCATTACCAAAACAGTTGGGCAGCATGAGGTTAGCACGGATAAAATTCTCCTCAAATCCTCAACGGGGTTGACAAAAAAGGCGAAAGGGTACGGGAAAACATCCACCGCGTTGAGTTTCATCTTCGGGTGCCCTCAAAAATGGCTACTCGATGGCTTAACCAAAGGCTCCAGAGGAATGGCTGGGCTTGGAAGGACAAGCATTGGGTTGGCCTCTCAGTTTTCGTCTCCAAAATTTGCTCTGTGTATGCCATCTTCCTCGAACTCCAAAGGGATCGTGATGTTTGGCGACCCTTCTTACACATTCTTCCCATATTACAACACTTCCAAGATCATAGACGTTTCTACCAGATTCTCTTACACAAAACTGTACCTCAATCCAGTTAGCACGGCAGTACCTTTCATTCCAGACGAGCCATTGAACGAGACCTCAGCAGATTACTTCATCAAAATCAGTTCGATAGAGATCGAAGGACATCGCCTACCAATCAAACCGGATCTGCTAGAAATCAACGACAAGGGTTTCGGAGGAACCAAAATCAGCACTGTAAATCCCTACACAGTTCTCGAGTCTTCCATCTACACAGCTTTTGCGGAGAGTTTCAGCAAACAGCTCACCGGCAAGGGCTTCGGCGTTCCGAAAGTGGCCGCCGTGAAACCATTCACGGAGTGCTTCAACCGGAGCGCAGCGGCATTAACCCTGCTCGGTCCTGCCGTTCCACAGATTCGGTTAGTTATGGAGAATCAGAGCATCCATTGGGACATTGAAGGAAACAATACGATGGTGGAGATGAACAAAGAAGTATTTTGCTTAGGATTCGTGGACGGGGGAGAGAACCCAAGGACGTCGATCGTGATCGGAGCCCGTCAAATAGAAAACATTCTTCTGGAGTTCAACGTTGGGGCGTCGAAGCTTGGATTCACCAATCTTAGGTATGAAGAAAGTGGGTGCGAAAATTACATCATATGA 1356 48.16 MAAIPRIPGSISIFFFIFSSFSLSNALPLSSNPKALYLPVSKDATTLQYSTRFSVGTPFLPVSLVLDLGGRLTWINCEIISKSSSYRPSPCGSPPCLTAKAPVCVDFCFSGPTPVPGCNNNTCNFYVENSITKTVGQHEVSTDKILLKSSTGLTKKAKGYGKTSTALSFIFGCPQKWLLDGLTKGSRGMAGLGRTSIGLASQFSSPKFALCMPSSSNSKGIVMFGDPSYTFFPYYNTSKIIDVSTRFSYTKLYLNPVSTAVPFIPDEPLNETSADYFIKISSIEIEGHRLPIKPDLLEINDKGFGGTKISTVNPYTVLESSIYTAFAESFSKQLTGKGFGVPKVAAVKPFTECFNRSAAALTLLGPAVPQIRLVMENQSIHWDIEGNNTMVEMNKEVFCLGFVDGGENPRTSIVIGARQIENILLEFNVGASKLGFTNLRYEESGCENYII 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47428810 47430165 + Bma022075.1 Bma05g00939 83023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00939 451 Gene3D Acid Proteases 232 450 IPR021109 -
Bma05g00939 451 Gene3D Acid Proteases 24 226 IPR021109 -
Bma05g00939 451 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 442 - -
Bma05g00939 451 SUPERFAMILY Acid proteases 41 440 IPR021109 -
Bma05g00939 451 Pfam Xylanase inhibitor N-terminal 49 226 IPR032861 -
Bma05g00939 451 Pfam Xylanase inhibitor C-terminal 275 437 IPR032799 -
Bma05g00939 451 PANTHER ASPARTYL PROTEASE-RELATED 13 442 IPR001461 GO:0004190|GO:0006508
Bma05g00939 451 ProSiteProfiles Peptidase family A1 domain profile. 49 437 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00939 - - - csin:114277548 379.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00939 Bma-Chr5:47428810 Bma09g00690 Bma-Chr9:44969966 3.95E-121 dispersed
Bma15g00591 Bma-Chr15:7430754 Bma05g00939 Bma-Chr5:47428810 4.77E-13 dispersed
Bma05g00939 Bma-Chr5:47428810 Bma05g00947 Bma-Chr5:47528930 5.47E-49 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g436 . . . Bda08g00394 . . . Bma05g00939 . . . . . . . Cpe08g00244 . . . . . . . . . . . . . . . . . . . . . . Cme06g00641 . . . . Bpe05g00757 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01367 Chy06g00610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025039 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00939 Bma_Chr05 FPKM 13.125235 14.655092 18.19718 18.507631 19.022985 19.196856 19.440535 27.571886 28.454533 27.274731