Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00945 AAATGTGTTCTGAAAGTGAACATCCACTGTGATGGATGTAAGCAGAAAGTGAAGAAAATCTTGCAGAAGATTGATGGTGTTTTCAAAACAGAAATTGATGCAGAGCAAGGGAAGGTGACAGTGTATGGAAATGTAGAGCCAGCAATCCTCATTAAAAAGCTTGCAAAATCAGGCAAACATGCCGAGCTCTGGCCCTCTCCAAACCCCAACCATGGAAACCAAATGAAGAATTTGCAGATCCTAAATACGGGAAATGCTCTCCCCAAACCTTCCAAAGGTGGAAATGAGCAGACCAAAAATGGCGGAAATGCTCTGCAGCTTCAACAACAGCTGAAGCAGCTTGAGCAGATTCGTGGGCTTCAAGATCTGAAGCTTCCACCTCCGATCAAAGACTTGAAATTACCCTCTAAAGACCAGAACCCGAATCAGAAATCTAACAAATTTGAGTTGCAGGAGGATGATGAAGATTTCAGTGACGATGATGACCTAGATGACTACTACGACGAGGAAGAAGACGACGATAGCGAAGAAGAGGTTCAAATTCCTCAGAAGGGTGGAAATGGGAAGAAAGACGGAAAAATTGAGAATGGTGGGAAGAAAGCCGGTGGCATCAGCAGCCTAAATCAAGCTGGGGTGGCCGGTAAAAATGGAAGTGAAGCCGGCGGAGCAAAAATGGGTAACAAGGTCAATATAGATATTAAAAATGGAGTTCAAACTATGCCCAATGGCTTTCAGACCTTGGGAGCTCCACCCGGTGGTCGAATGGGTAACAATCCGACAGTTCAAGGGCTCCCAGCGAACGCCATGAACGGCGGTGGAGGTGGGTATCCCCATTCCTCAGGGCCGGGATCCATGGCCGGAAATCCCTACAACCAGCAACAATACATAGCGGCGATGATGAACCAGCCAAGAGCAATGGCGAACCAGCCGATGATGTACGCTCGGCCACCAGCGGCGGTCAACTACATGCCAGCCTACTCCTTTCCTCCACCGGCAATTCCGCCAGCGGACCCGTATACCCACTATTTCAGCGACGAAAACACGTCAAGCTGCAACGTGATGTGA 1065 48.26 KCVLKVNIHCDGCKQKVKKILQKIDGVFKTEIDAEQGKVTVYGNVEPAILIKKLAKSGKHAELWPSPNPNHGNQMKNLQILNTGNALPKPSKGGNEQTKNGGNALQLQQQLKQLEQIRGLQDLKLPPPIKDLKLPSKDQNPNQKSNKFELQEDDEDFSDDDDLDDYYDEEEDDDSEEEVQIPQKGGNGKKDGKIENGGKKAGGISSLNQAGVAGKNGSEAGGAKMGNKVNIDIKNGVQTMPNGFQTLGAPPGGRMGNNPTVQGLPANAMNGGGGGYPHSSGPGSMAGNPYNQQQYIAAMMNQPRAMANQPMMYARPPAAVNYMPAYSFPPPAIPPADPYTHYFSDENTSSCNVM 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47502842 47504007 + Bma022081.1 Bma05g00945 83029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00945 354 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 354 - -
Bma05g00945 354 Gene3D - 1 68 - -
Bma05g00945 354 ProSiteProfiles Heavy-metal-associated domain profile. 7 63 IPR006121 GO:0046872
Bma05g00945 354 Pfam Heavy-metal-associated domain 4 59 IPR006121 GO:0046872
Bma05g00945 354 MobiDBLite consensus disorder prediction 179 197 - -
Bma05g00945 354 MobiDBLite consensus disorder prediction 152 178 - -
Bma05g00945 354 MobiDBLite consensus disorder prediction 125 206 - -
Bma05g00945 354 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33 1 354 - -
Bma05g00945 354 CDD HMA 3 62 IPR006121 GO:0046872
Bma05g00945 354 SUPERFAMILY HMA, heavy metal-associated domain 3 65 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00945 - - - jre:109005887 271.937
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00945 Bma06g01540 CCT
Bma05g00945 Bma06g01540 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01173 Bma-Chr4:30299006 Bma05g00945 Bma-Chr5:47502842 1.30E-53 dispersed
Bma04g01176 Bma-Chr4:30635070 Bma05g00945 Bma-Chr5:47502842 3.13E-119 dispersed
Bma04g01317 Bma-Chr4:44824345 Bma05g00945 Bma-Chr5:47502842 3.18E-47 dispersed
Bma05g00945 Bma-Chr5:47502842 Bma06g01540 Bma-Chr6:51750964 2.39E-24 dispersed
Bma08g01210 Bma-Chr8:51089004 Bma05g00945 Bma-Chr5:47502842 1.84E-12 dispersed
Bma14g01346 Bma-Chr14:24865073 Bma05g00945 Bma-Chr5:47502842 9.05E-14 dispersed
Bma05g00945 Bma-Chr5:47502842 Bma06g01118 Bma-Chr6:47939347 1.92E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g432 . . . Bda08g00392 . Bpe14g01320 . Bma05g00945 Cmo08g01141 Cmo17g00256 Cma06g01433 Cma14g01677 Car06g01235 Car14g01511 Sed02g1273 . . Bhi01g00858 Tan10g0886 Cmetu11g1818 Lac12g2329 Hepe05g1523 . Lcy11g1507 Cla06g00546 Cam06g0589 Cec06g0586 Cco06g0594 Clacu06g0576 Cmu06g0570 Cre06g1336 Cone14ag0822 . Cone7ag0216 Cone4ag0208 Lsi05g01455 . Chy11g01430 Cme06g00645 . . Bda11g00561 . . Bpe13g00622 . Bma06g01540 . Cmo06g01436 Cmo14g01722 Cma08g01168 Cma17g00269 Car08g01046 Car17g00244 . . Bhi12g01804 . . . . . . Cla05g00578 Cam05g0634 Cec05g0644 Cco05g0639 Clacu05g0630 Cmu05g0598 Cre05g0666 Lsi09g01356 Csa03g01371 Chy06g00615 Cme11g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000577 6 3 3 5 3 3 6 3 3 3 3 2 6 3 3 6 2 4 1 3 4 3 3 3 3 3 4 5 3 3 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00945 Bma_Chr05 FPKM 29.556358 27.279778 20.025232 20.120579 7.318664 6.976333 7.573037 0.206382 0.262863 0.473007