Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00958 ATGTCTCCTAATTATGTGACTAGAAGACAGTCCTTAAAGCTTCTCTCGGAATTCCTATTAGAACAAGCGAATTCCCATTTAATGAAGCGCTACATATCTGAAGTTCGTAACTTGAAACTTATGATGACATTGTTGAAGGATTCAAGCAAAAATATCCAACTTTCCGCATTCCACATATTCAAGGTTTTTGTTGCTAATCCTGGCAAGCCACGAGAAGTAAAGATTATTTTGGCTAAAAACCATGAAAAATTGTTGGAATTACTTCACAATCTGTCTCCTGGGAAAGGTGCTGAAGATGAGCAGTTTGAGGAGGAAAAGGAATTAATCATCAAAGAAATTGAAAGATTCTCTCTCCCAAATCAAGTTTTCTAG 372 36.29 MSPNYVTRRQSLKLLSEFLLEQANSHLMKRYISEVRNLKLMMTLLKDSSKNIQLSAFHIFKVFVANPGKPREVKIILAKNHEKLLELLHNLSPGKGAEDEQFEEEKELIIKEIERFSLPNQVF 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 47837892 47839250 + Bma022104.1 Bma05g00958 83042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00958 123 Pfam Mo25-like 2 115 IPR013878 -
Bma05g00958 123 SUPERFAMILY ARM repeat 2 116 IPR016024 -
Bma05g00958 123 Gene3D - 1 116 IPR011989 -
Bma05g00958 123 PANTHER PROTEIN MO25 2 117 - -
Bma05g00958 123 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 2 117 IPR013878 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00958 K08272 CAB39, MO25; calcium binding protein 39 - csv:101216176 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00958 Bma-Chr5:47837892 Bma11g00032 Bma-Chr11:525241 3.46E-31 transposed
Bma05g00958 Bma-Chr5:47837892 Bma07g00026 Bma-Chr7:1231838 7.72E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g320 . . . . . . . Bma05g00958 . . . . . . Sed02g1185 . . Bhi01g01000 Tan10g1000 Cmetu06g0377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01659 . . . . . Cpe17g00072 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009271 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00958 Bma_Chr05 FPKM 12.64973 12.575044 14.352596 13.329606 13.987309 11.219506 13.114175 15.753516 16.469833 18.681253