Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00963 ATGGCGGAATTGCATGTCTGCTGCTCTAACCGTGAGGGTGGGGCTATTTTTAGCAGGACTTGTAATGTGAGGTTTGAGGTCTTCCAATTCTATGATGCTTCGTTGATAATCTTCCCTTCCTCGGATAATGGATGGAAGGTTCAGATTTCAGTTTCCGTGTTGTGCACATCGGCATTGATATTATTGGCGGTAGTGATCGGAGTTTTGATAGTCCGACACCGGCAAAAAATCAACGCCAAGAAAGAAGAGGAAACTAACAGAAAGACTATGCTGCAAAATTTGGGGGCTCCCCAGGGAGTGACGATCACAGATAAGGGCGAGTTCGTGCATTCCGAAGAATTGATCTTCATGGATCTAAACGTCGTAAAGTCTGCTACCGACAACTTTTCCGAATGGAACAAGCTTGGACAAGGCGGCTTTGGGTCGGTTTATAAGGGTATGCTAGCAGATGGGAAGGAGATAGCAGTGAAGAGACTGTCAAGGAAGTCATGGCAAGGGCTGGTGGAATTCAAGAATGAGATTATACTCATCGCTCGACTTCAACACAAAAACCTCGTCAAACTCATTGGTTGCGCGATGTCCGGGGACGAGAAGCTGCTTATCTACGAATTCATGCCAAACAACAGCTTGGATACCTACATTTTTGATTCGGAAAGGCGATCGAAACTAGGCTGGAGGAAGTGCTTTGAAATAATTATCGGAATAGCACGGGGGCTTCTCTATCTTCACCAAGACTCGAGGCTGACGATCATTCACCGGGATTTGAAGCCGAGCAATGTGTTGTTGGACCGCGAAATGGCGGCTAAAATCTCCGATTTCGGAATGGCGAGGATCTTTTGCGAAAATGAGAACACGGCTAATACCAAACGAGTCGTGGGATCGTTCGGATACATGGCCCCGGAATATGCGATGGAGGGAGTGTTCTCCGTCAAGTCTGATGTGTACAGCTTCGGGGTAGTTCTGCTTGAAATCGTTAGTGGAAGAAGAAACAATGGCTTCCATCAAAATGAGCTAGCCCAATCACTTGCAGCGCATGCATGGTGGCTGTGGAGCAACGGGAAAGAAGCAGAGCTGGTGGAGCCATGGCTGCTGGAAACAAACTCAGCACAGCAGGCTGTGAGATGCATTCAAATAGGGCTGTTATGTGTGCAAGAAGATCCAGCAGACAGACCAACCATGGCTTCTGTGATGGTTTTTTTAGGGAGTGAATCGACAACGGCCCTCCCTTGGCCGAAGCAGCCGGCCTTTTCTGTCAGTAGAATCCGTCGTTCGTCTTCCTCGACGAACTGTTCGGTAAATGACATTAGTCTCTCCTTGGTTTCTCCTCGTTGA 1332 47.9 MAELHVCCSNREGGAIFSRTCNVRFEVFQFYDASLIIFPSSDNGWKVQISVSVLCTSALILLAVVIGVLIVRHRQKINAKKEEETNRKTMLQNLGAPQGVTITDKGEFVHSEELIFMDLNVVKSATDNFSEWNKLGQGGFGSVYKGMLADGKEIAVKRLSRKSWQGLVEFKNEIILIARLQHKNLVKLIGCAMSGDEKLLIYEFMPNNSLDTYIFDSERRSKLGWRKCFEIIIGIARGLLYLHQDSRLTIIHRDLKPSNVLLDREMAAKISDFGMARIFCENENTANTKRVVGSFGYMAPEYAMEGVFSVKSDVYSFGVVLLEIVSGRRNNGFHQNELAQSLAAHAWWLWSNGKEAELVEPWLLETNSAQQAVRCIQIGLLCVQEDPADRPTMASVMVFLGSESTTALPWPKQPAFSVSRIRRSSSSTNCSVNDISLSLVSPR 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48086594 48088911 + Bma022113.1 Bma05g00963 83047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00963 443 Pfam Domain of unknown function (DUF3403) 405 443 IPR021820 GO:0004674
Bma05g00963 443 Pfam Protein tyrosine and serine/threonine kinase 133 398 IPR001245 GO:0004672|GO:0006468
Bma05g00963 443 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 440 - -
Bma05g00963 443 CDD STKc_IRAK 135 396 - -
Bma05g00963 443 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 440 - -
Bma05g00963 443 SMART serkin_6 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00963 443 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Bma05g00963 443 SUPERFAMILY Protein kinase-like (PK-like) 116 422 IPR011009 -
Bma05g00963 443 ProSiteProfiles Protein kinase domain profile. 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00963 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Bma05g00963 443 Gene3D Transferase(Phosphotransferase) domain 1 205 407 - -
Bma05g00963 443 Gene3D Phosphorylase Kinase; domain 1 104 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00963 Bma-Chr5:48086594 Bma07g00473 Bma-Chr7:5727607 3.59E-128 dispersed
Bma05g00963 Bma-Chr5:48086594 Bma11g00349 Bma-Chr11:3443747 5.38E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66506 PF07714 PK_Tyr_Ser-Thr 4.10E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00963 - - pop:112325751 533.102