Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00972 ATGAGTTCTGTGAGTCTTCTTGACCATGGTCGTGGCGGTGGAGGTGCCAGATTATTAATTGACGATAACAGAAGCAGCCATGTCCAATTCAACAACATGCCCATTTCTGCCATTGTTGACCCTGGAGTTTTTTCTCATTCTCTGGCCAAATCCTCTATTTTCAGCTCTCCTGGACTCTCTCTCTCGCTTCAAACTAATTTGGAGGCGTCACCCACAATGGCTGAAGCTTTCGAGCATAACCTTGGGAGAAGTAGAGAGGAATTAGAGCATGAAAGCAGATCCGGCAGTGATAACATGGTTGGCGCCTCCGGCGACGAACAAGATGCCACCGGCGACAAGCCACGGAGAAAGAAACGATACCACCGACACACTCCTCAGCAAATCCAAGAACTCGAACTAGTTTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTAGAGCTTAGCCGGAGGCTATGTCTGGAAACCAGACAAGTTAAATTCTGGTTCCAAAATCGTCGAACCCAGATGAAGACTCAGTTGGAAAGGCACGAGAATACGCTGTTGAGGCAAGAAAACGACAAGCTCCGATCGGAGAACTTGTCTATCAGAGAGGCGATGAGGAACCCAATTTGCACCAACTGCGGTGGTCATGCGATGATTACTGAAGTATCACTTGAAGAACAGCAACTGAGGATCGAAAACGCCCGATTGAAAGACGAGTTAGACCGTGTTTTCCTCCTCGCCGGAAAGTTTCTGGGCCGACCTGTTGCTACTCCACTTTCGGGCTCAAATTTAGAGCTTGGGGTTGGAATGAACGGCTTTGGTGGCCTCCCTGTGCCTGCATCCATGACTCTTCCGCCGGAATTTACCATCGGAATTTCCGACAATTCACATAGTTCTGTGGAGAGGTCCATGTTTCTAGAGCTAGCGTTGGGTGCCATGGATGAACTGGTGAAAATAGCGCAGATAGACGACCCTCTTTGGACCAGAAATTCAAAAATGGGAAGAGAAATTCTGAACCAGGAGGAGTATATGAAAATACTGTCTCCTTGCATTGGTTTAAAATCAAATGGTTTTGCAAGGGAGGCTTCGAGAGAGACCGGCCTCGTTATGATTAACACCATCGCTCTAGTCGAAACGCTGATGGATTCGAAACGTTTGGCGGAGATGTTTCCTTGTTTGATTGCTAGAACGAGCACGACGGATGTGATATCGAGCGGAGTGGGAGGAACACGAAATGGTGCATTGCAACTGATGCATGCTGAATTTCAAGTGCTGTCTCCATTGGTTCCGATTCGATCTGTTAGTTTCCTTCGCTTCTGCAAACAGCACGCCGAAGGGGTCTGGGCCGTAGTCGATGTCTCCATCGACACCATGAAAGAAGCTAACTCTAGGAGGCTTCCTTCTGGCTGTGTTATCCAAGATATGCTAAATGGCTTCTCCAAGGTGACGTGGGTGGAGCATGCTGAGTACGACGAAAGCCAAGTCCACCACCTCTACCGCCCCCTACTAAGCTCCGGCATCGGCTTCGGAGCTCGACGATGGGTGGCCACCCTCCTACGCCAGTGCCAATGTCTCGCCATCCTCGTGTCTTCCTCCCTTCAGCCTCCCAACCACAGTGCCATAACTCCGGCGGGTCACCGGAGCATGTTGAAGTTGGCCGGGAGGATGACCGAAAACTTCTGTGCTGGAGTGTGCGGATCGACGGCGCATGAATGGAACAAGCTTAACGCCGGAAATGTGGATGAGAACGTCCGGGTGATGACCCGACAGAGCATCAACGATCCCGGGGAGCCTTCTGGAATCGTGCTGAGCGCCGCCACGTCGGTTTGGCTGCCGGTTTCCCTGGAGCGGTTGTTCGACTTTCTTCGCGATGAACGGCTGAGGAGCGAATGGGACATTCTATCCAACGGCGGACCCATGCAGGAGATGACCCGCATTGCCAAAGGCCAAGACCGTCGCAACTGTGTCTCTCTCCTCCGAGCTAGCGCTACGAATGCCAATCAGAGCAGTATGCTAATACTTCAGGAGACATACATGGACGTTGCGGGATCATTAGTCGTGTACGCCCCGGTCGACGTACCTGCAATGCAAATTGTGATGAACGGCGGAGATTCAACCTACGTGGCACTATTACCATCGGGATTCTCCGCAGTACCTGATGGACGAGGGTTGATTGGCCCCGTCGAAACAATCGACGACGGTAAATCTGGAGAAGGCAATGATGACTCAAGACTACTTAACGGTGGTGGGTGTCTCCTCACCGTAGCCTTTCAAATCCTAGTGAACAACCTCCCAACGGCCAAGCTCACGGTAGAGTCGGTGGAGACGGTCAACAATCTCATCTCCTGCACTGTACAAAAGATCAAGGTTGCCCTTCAATGCGACAATTAA 2379 51.07 MSSVSLLDHGRGGGGARLLIDDNRSSHVQFNNMPISAIVDPGVFSHSLAKSSIFSSPGLSLSLQTNLEASPTMAEAFEHNLGRSREELEHESRSGSDNMVGASGDEQDATGDKPRRKKRYHRHTPQQIQELELVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRSENLSIREAMRNPICTNCGGHAMITEVSLEEQQLRIENARLKDELDRVFLLAGKFLGRPVATPLSGSNLELGVGMNGFGGLPVPASMTLPPEFTIGISDNSHSSVERSMFLELALGAMDELVKIAQIDDPLWTRNSKMGREILNQEEYMKILSPCIGLKSNGFAREASRETGLVMINTIALVETLMDSKRLAEMFPCLIARTSTTDVISSGVGGTRNGALQLMHAEFQVLSPLVPIRSVSFLRFCKQHAEGVWAVVDVSIDTMKEANSRRLPSGCVIQDMLNGFSKVTWVEHAEYDESQVHHLYRPLLSSGIGFGARRWVATLLRQCQCLAILVSSSLQPPNHSAITPAGHRSMLKLAGRMTENFCAGVCGSTAHEWNKLNAGNVDENVRVMTRQSINDPGEPSGIVLSAATSVWLPVSLERLFDFLRDERLRSEWDILSNGGPMQEMTRIAKGQDRRNCVSLLRASATNANQSSMLILQETYMDVAGSLVVYAPVDVPAMQIVMNGGDSTYVALLPSGFSAVPDGRGLIGPVETIDDGKSGEGNDDSRLLNGGGCLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIKVALQCDN 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48169367 48174112 + Bma022122.1 Bma05g00972 83056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00972 792 ProSiteProfiles START domain profile. 294 523 IPR002913 GO:0008289
Bma05g00972 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 68 790 IPR042160 -
Bma05g00972 792 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Bma05g00972 792 SUPERFAMILY Homeodomain-like 101 174 IPR009057 -
Bma05g00972 792 SMART START_1 303 520 IPR002913 GO:0008289
Bma05g00972 792 Coils Coil 215 235 - -
Bma05g00972 792 CDD START_ArGLABRA2_like 298 519 - -
Bma05g00972 792 SUPERFAMILY Bet v1-like 297 520 - -
Bma05g00972 792 Coils Coil 168 203 - -
Bma05g00972 792 SUPERFAMILY Bet v1-like 553 783 - -
Bma05g00972 792 Pfam Homeodomain 117 172 IPR001356 GO:0003677
Bma05g00972 792 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Bma05g00972 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 68 790 - -
Bma05g00972 792 SMART HOX_1 115 178 IPR001356 GO:0003677
Bma05g00972 792 Gene3D - 103 190 - -
Bma05g00972 792 Pfam START domain 304 520 IPR002913 GO:0008289
Bma05g00972 792 MobiDBLite consensus disorder prediction 83 125 - -
Bma05g00972 792 CDD homeodomain 116 174 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01044 Bma05g00972 CCT
Bma02g01044 Bma05g00972 ECH
Bma04g01080 Bma05g00972 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00972 Bma-Chr5:48169367 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma01g01177 Bma-Chr1:13028626 Bma05g00972 Bma-Chr5:48169367 1.79E-83 transposed
Bma02g01044 Bma-Chr2:51980717 Bma05g00972 Bma-Chr5:48169367 0 transposed
Bma06g01236 Bma-Chr6:49558018 Bma05g00972 Bma-Chr5:48169367 0 transposed
Bma10g01213 Bma-Chr10:42937910 Bma05g00972 Bma-Chr5:48169367 0 transposed
Bma04g01080 Bma-Chr4:23655765 Bma05g00972 Bma-Chr5:48169367 1.14E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57352 PF01852 START 8.10E-43 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00972 K09338 - csv:101222248 1119.38