Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00981 ATGTCGTTTTCCGACTCTGATTCCTCCTCCCATGGCGGAGATATGGAGTACAAAACCTTTCGCCAAATCAGCCGTGATCGGTTATTGAACGAAATGCTTGGAGCAGCTAAAATTGGGGACCCAAAATCTTGGAAGGTACTTATTATGGACAAAGTTACAGTAAAAGTGATGTCTCACAATTGTAAAATGGCAGATATTACAGATCAAGGAGTTTCATTGGTGGAAGATCTTTTTCGGAGAAGGCAACCATTGCCATCTATGGATGCCATTTACTTTCTACAACCATCAAAAGAGAATGTTGTCATGTTCTTATCTGACATGTCTGGAAGGGAGCCTTTGTACAAGAAAGCATTCGTATTTTTCAGTGCACCTATCCCAAAGGAATATGTCAATCACATCAAAAGTGATACAAGTGTCTTACCTCGCATTGGTGCATTACGAGAGGCTTTTATAACTGATAATGGAAATGCATTGGAGGAGCTTCTTGGAAATGTTGAAAATTCTCACAAGTTTAATGCTTGCTTGAACGTAGTGGCAACTCGAATTGGCACCGTTTTTGCTTCACTTAAGGAGTATCCATTTGTGCGATATCGTGCTGGTAGGGCCCTTGAAGAACCTACTGCAACATCATCACGCGACTTAGTTCCTTCAAAGCTCGCTTCTGCTATTTGGAACTGTATTACAAACTATAAGTCTTCTATTCCCAATTTTCCCCAGTCTGAAACATGTGAGCTGCTAATCTTGGATAGATCAATTGATCAGATTGCTCCTGTCATACATGAGTGGACTTATGATGCTATGTGTCATGATTTGTTGGATATGGATGGTAACAAATTTACATATGAGATTCCTAGCAAAAAGGGTGGTCAACCGGAGAGAAAAGAGGTTGTATTGGATGACAATGATCCAATCTGGCTTGAGCTTCGGAATGTACATATTGCAGATGCTGGTGAGCGACTACACGAGAAGACAAATTCAGTATCAAAAAACAAAGCTGCACAAATTCAACAGAGTGCAAGGTGGTTTGCCTTTTGCGACCCTTTGGAATTGTTGACAGTTTCCAATATCAAATATTTTATATTCTATTTGCATATTGTTGTTTTTTTGTACAGAGATGGTAATGAAATATCAACTCGAGATTTGCAAAAAATGGTTCAAGCTTTGCCACAATACACTGAGCAAGTTGATAAGATCAGTCTCCATGTAGAGATTACTGGAAGAATCAACAAAATAATCCGGGAAACAAAACTCAGAGAACTTGGACAACTGGAACAAGACCTTGTTTTTGGGGATGCAGGAGCCAAGGATGTCATTAACTTCCTTAGAACAAATCAGAATATAAGTCCAGAAAATAAGTTGCGTTTATTGATGATTTATGCGTCCGTCTATCCCGAAAAGTTTGAGGGAGACAAAGCTTCAAAAATAATGCAGTTGGCTAGATTGTCAACTGAGGATATGAAGGTTGTGAATAATATGCGGTTGCTGGCCGGCTCTGACAGCAAAAAGTCAACAACAGGTGGTTTCTCTCTTAAGTTCAATGCACAGAAGACAAAAGAAGCAACACGAAAGGATAGAACTGGAGATGAAGAAACCTGGCAACTTTTTAGATTTTATCCCATGATAGAGGAACTCATTGAAAATCTATGCAAAGGTGAATTACCAAAGAATGAGTATCCATGCATGAATCCTCTTACTGTAGTGAAAGAATCAAAGAGGGTTGCTCCTACCTCATCAGTTCAGACTAGTCAATCTACTACGGCTCATTCAATGAGATCGAGACGGACACCAAATTGGGCACGACCTTCTCATTCTGATGATGGATATTCGAGCGACTCAATTTTGAAAAATGCAACTACTGGTTATAAAAAAATGGGAACACGTGTTTTTGTATTTATCATAGGTGGTGCAACCAGATCTGAGCTACGCGCATGTCATAAGCTCATGACCAAACTGAGGTGTCCTTCTTCATCAAGAATTTCACCACGTGGAATATTTTGTAGCCGTACATTGAATCTACGATCAATAAGTGCCATTGGATATGACATGGATTACACATTGATGCATTATAACGTGATGGCTTGGGAAGGAAAAGCGTATGACTACTGTATGAACAATTTGAAGAACATGGGTTTCCCTGTAGATAGTCTTTCATTTGATCCTGACTTGGTTATAAGAGGCCTCGTCATAGACAAAGAGAGAGGTAATTTGGTTAAAGCAGATCGATTTGGTTATGTAATGAGGGCAATGCATGGAACCACAATGTTATCTACACGAGAGATGAGTGAGATTTACGGGAGGGAGTTAGTGGATCTACGAAAGGAGAGTCGATGGGAATTCCTCAATACTTTCTTCTCTGTTTCTGAGGCTGTGGCATATATGCAGATGGTTGATAGATTGGACAACGGAGCCATAGCAGAAATTGGTCCTCTTGACTATAAAGGACTTTACAAGGCTGTTGGTAAAGCACTATTCAGAGCTCATGTTGAGGGACAACTTAAGAGTGAAATTATGTCAAAGCCCGAATTGTTTGTGGAACCTGATCCTGAGCTACCTTTAGCTCTTCTGGATCAAAAAGAGTCAGGCAAAAAGCTTCTGCTCATTACCAACTCGGATTTTCATTACACAGATAAAATGATGCAACACTCTTTTAACAGATTCCTTCCTAATGATATGGGCTGGCGAGATCTATTTGATATCGTAATAGTCTCAGCTAGGAAGCCAGAGTTCTTCCAAATGTCACACCCAATGTATGAGGTAGTGACAGGTGAAGGTCTTATGCGGCCGTGCTTCAAGGCTCATGCAGGGGGTTTGTATTCAGGGGGAAGTGCACAGATGGTTGAGAATTCATTAAATATTCATGGAGATGAAATCTTATACGTTGGTGACCATATTTACACTGATGTAAGTCAATCAAAAGTCCATTTACGCTGGCGAACGGCATTGATATGTCGAGAATTGGAAGAAGAGTATAGTGCGCTGATTCGTAGCCGGGCTTATAGAGCATCACTAGTAGAACTTATAAATCAGAAAGAGGTTGTGGGAGATTCTTTCAACCAACTTCGACTGGCTTTGCAAAGGAGAATTAAAGACCGGCCTGCACAAACACTCCCAGCAACCAACATGGATGATGAGGAACTTACAGAAAGGATGCAAAAGCTGCTGATAGTTATGCAAAGACTTGATGAGAAAATTGGTCCCATGCTAGAAAGAGATGGTGAGCACTTCAACAAAAGGTGGGGATTTCTTTCACGTGCAGGTCTTTGGGATAAAAGTCATTTGATGAGACAGATTGAAAAGTATGCCGACATATATACTTCAAGGGTCTCTAATTTCTTGCATTATACGCCATTCATGTATTTCCGCTCCCAAGAACAGAACCTAGCCCATGACTCGTATTCGTATTACAAACCACAGCCAAATGGGCATGCTATTGACAACGAAGGCAACTAA 3450 40.43 MSFSDSDSSSHGGDMEYKTFRQISRDRLLNEMLGAAKIGDPKSWKVLIMDKVTVKVMSHNCKMADITDQGVSLVEDLFRRRQPLPSMDAIYFLQPSKENVVMFLSDMSGREPLYKKAFVFFSAPIPKEYVNHIKSDTSVLPRIGALREAFITDNGNALEELLGNVENSHKFNACLNVVATRIGTVFASLKEYPFVRYRAGRALEEPTATSSRDLVPSKLASAIWNCITNYKSSIPNFPQSETCELLILDRSIDQIAPVIHEWTYDAMCHDLLDMDGNKFTYEIPSKKGGQPERKEVVLDDNDPIWLELRNVHIADAGERLHEKTNSVSKNKAAQIQQSARWFAFCDPLELLTVSNIKYFIFYLHIVVFLYRDGNEISTRDLQKMVQALPQYTEQVDKISLHVEITGRINKIIRETKLRELGQLEQDLVFGDAGAKDVINFLRTNQNISPENKLRLLMIYASVYPEKFEGDKASKIMQLARLSTEDMKVVNNMRLLAGSDSKKSTTGGFSLKFNAQKTKEATRKDRTGDEETWQLFRFYPMIEELIENLCKGELPKNEYPCMNPLTVVKESKRVAPTSSVQTSQSTTAHSMRSRRTPNWARPSHSDDGYSSDSILKNATTGYKKMGTRVFVFIIGGATRSELRACHKLMTKLRCPSSSRISPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMNNLKNMGFPVDSLSFDPDLVIRGLVIDKERGNLVKADRFGYVMRAMHGTTMLSTREMSEIYGRELVDLRKESRWEFLNTFFSVSEAVAYMQMVDRLDNGAIAEIGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKESGKKLLLITNSDFHYTDKMMQHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPMYEVVTGEGLMRPCFKAHAGGLYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYSALIRSRAYRASLVELINQKEVVGDSFNQLRLALQRRIKDRPAQTLPATNMDDEELTERMQKLLIVMQRLDEKIGPMLERDGEHFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQNLAHDSYSYYKPQPNGHAIDNEGN 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48298498 48320521 + Bma022130.2 Bma05g00981 83065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00981 1149 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 635 1138 - -
Bma05g00981 1149 MobiDBLite consensus disorder prediction 571 609 - -
Bma05g00981 1149 Coils Coil 1043 1063 - -
Bma05g00981 1149 Gene3D - 825 1013 IPR023214 -
Bma05g00981 1149 SUPERFAMILY HAD-like 661 1132 IPR036412 -
Bma05g00981 1149 Gene3D - 13 148 IPR043154 -
Bma05g00981 1149 SUPERFAMILY Sec1/munc18-like (SM) proteins 19 651 IPR036045 -
Bma05g00981 1149 CDD HAD_cN-II 665 986 - -
Bma05g00981 1149 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 635 1138 IPR008380 -
Bma05g00981 1149 Gene3D - 415 538 - -
Bma05g00981 1149 Gene3D - 150 649 IPR027482 -
Bma05g00981 1149 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 664 1002 IPR008380 -
Bma05g00981 1149 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 261 414 IPR043127 -
Bma05g00981 1149 Pfam Sec1 family 45 649 IPR001619 GO:0016192
Bma05g00981 1149 Pfam 5' nucleotidase family 664 1131 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00981 K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1 - qsu:112027824 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00209 Bma-Chr4:1815085 Bma05g00981 Bma-Chr5:48298498 3.15E-59 dispersed
Bma05g00981 Bma-Chr5:48298498 Bma14g00014 Bma-Chr14:155256 0 dispersed
Bma05g00981 Bma-Chr5:48298498 Bma05g00120 Bma-Chr5:3867725 1.10E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001688 2 5 1 2 2 2 4 2 2 1 3 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 3 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00981 Bma_Chr05 FPKM 0.208732 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0