Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00985 ATGGTTGAAATTATGGCCCCAGTTCGTTCCTCTGGATCTGTTGACCCTGGTTGGGAGCATGGTGTTGCTCAAGATGAGAGGAAGAAGAAAGTCAAATGTAATTACTGTGGAAAGATTGTCAGTGGTGGGATATATAGATTAAAACAACATTTGGCTCGAGTTTCTGGAGAAGTTACTTACTGTGAGAAGGCACCAGAAGAAGTATATTTGAGAATAAGAGAAAATCTGGAAGGTTCTTCTTCCAATAAAAGATCAAGGGAAATTAAAGCTACTGGTCAAGCATATTTAAATTTCTATGCAAATAATGATGAGAAAGAGGCAAAACATGATGGGTGTAGAAGCAAAGGAAAGCAAGTAATTGTTGGGAGGAATTTCTCTCCAAACTTGACTTCTATTCGGTCATTGGGATTTGTTGACCCAGGGTGGGAACATGGTGTTGCTCAGGATGAAAGAAAGAAAAAGGTTAAGTGCAATTATTGTGAAAAGATTGTGAGTGGAGGTATCAATCGCTTTAAACAACATCTAGCTAGAATTCCTGGCGAAGTAGCTCCTTGCAAGCATGCACCAGAGGATGTGTATCTCAAGATCAAAGAAAATATGAAATGGCACCGAACTGGCAGAAGACACAGACGGCCTGATTCTAAAGATATATCGAGTTTTTACATGTCTTCTGATTATGAAAATGAAGTGAATGAGCAAGAAGAAGATGTAGCACTCAATTCAAACAATCATAGACTGACTGATGGTGATAAAAGTTTGAGAGAAGATATGCGAAATACTTTCAGAGGAATGTCCTCCAGTGGTGGTTCAGAGACAGTGCTGAAAAGGTCCAGATTGGATTCTGTTTTCTTGAGAACTGCAAAAAGACAGACTGATCATTTATACAAACACACAGTAAGAAAAAACGTGACAAATAAAAAATCTCGGACAGAAGTTCTGTCTGCAATTTGCAAATTCTTTTACCATGCAGGAGTTCCTTTGCAGGCAGCAAACTCTGTGTACTTTCAAAAGATGCTGGACTTAGTTGGTCAGTATGGACCAGGCTTAATAGGTCCTTCCAGTCGACAAATATCTGGTCCATATCTACAGGATGAAATTTCATTCATAAAGAATCACCTAACCGAGTATCGTGCGTCTTGGGCGATTACTGGTTGTTCTATTAGGACAGACCGATGGAAAGATTCAGAAGGCAAGACATTAATTAATTTTTCGGTGTCTTGTGCTCATGGTATGTACTTTGTCTCCTCAGTTGATGCAACTGATGCAATAGAAGATGCTTCAAACTTGTTTAAACTACTTGACAAAGTGGTGGAAGAGATAGGCGAGGAAAATGTGGTGCAGGTGATTACAGAGAATACTCCCATTTTTAAAGTTGTTGGGAAGATGCTCGAGGAGAAGAGACGACATTTATTCTGGACACCATGTGCTGTCTATTGTATTGATTGCATGCTCGAAGATTTTTTGAAGATAAGATTAGTGGAAGAGTGCATGGTGAAGGGTCAAAAAATAACAAAGTTTATTTACAATCATAACTGGTTGTTAAATGTCATGAAGAATGATTTCACTCAGGGGCAAGAACTTTTGAGACCAGCTGTTACTAGATGCGCCTCAAGCTTTGCTACTTTGCAGAGCTTGCTGGACCATAGAAATAGTCTTAAAAGATTGTTCGTATCAAATAAATGGGTTTCATGTTCCTATTCCAAATTTGATGAGGGAAAAGAAGTGGAAAAGATTGTCTTGAACACTACATTTTGGAAGAAAGTTCAGTGTGTTAGGAAATCAGTAGATCCCATACTGGAGATTCTTCAAAAGGTGGACAGTGGAAAAGGGTTGTTGATATCATCTCATTCTGAGGTGGTACGAGGACTCAATGAATGTATAGTTCGGCTGGAGCCAGACAATACCAAAAGGATTTCTGCTTCTATGCAGATTTCTGATTATAATTCGGCAAAAGCTGATTTTGGAACAGAGTTGGCTGTAAGTACAAGAACAGATCTTGATCCAGCTGCTTGGTGGCAACAGCATGGAATAAGTTGCTTAGAGCTGCAGAGAATTGCAGTCCGGGTGTTGAGTCAGACATGCACATCTTGCAGTTATGAGCAGAAATGGAGTATATTTGACCAAATTCGCACCCGAAGACATAATCTTTTAGCTCATCGAAAATTTAATGACCTAACTTACGTTCATTATAACCTGAGACTTAGAGAACAGCGACTGAGAAAGAATTCCAGTTATTCAATCTCTCTCGACAGTTCTCTTCTAGAGTGTTTGCTAGATGACTGGATTATTGCAACAGAAAAGCAAGCAATGCAGGAAGATGAGGAAATTCTCGAAGAAATGGAGCATGTTGATCTGTTGGAGAATGAATTAGTCGATTATGAAGATGAAAGTGGACAGGGAGAGGGAAGGAGGGGATGCTCAGAGTTTGGAACTTTGGTCGGTGCAGAGACATTGGACGGCAGTAATGCGACAAATGCCAGTGCCGGCACGGATAGTTCGCCGGAGCTCAAGTTCTATGATGATGATATGACTATGAGTGACTGA 2544 39.94 MVEIMAPVRSSGSVDPGWEHGVAQDERKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLRIRENLEGSSSNKRSREIKATGQAYLNFYANNDEKEAKHDGCRSKGKQVIVGRNFSPNLTSIRSLGFVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKHAPEDVYLKIKENMKWHRTGRRHRRPDSKDISSFYMSSDYENEVNEQEEDVALNSNNHRLTDGDKSLREDMRNTFRGMSSSGGSETVLKRSRLDSVFLRTAKRQTDHLYKHTVRKNVTNKKSRTEVLSAICKFFYHAGVPLQAANSVYFQKMLDLVGQYGPGLIGPSSRQISGPYLQDEISFIKNHLTEYRASWAITGCSIRTDRWKDSEGKTLINFSVSCAHGMYFVSSVDATDAIEDASNLFKLLDKVVEEIGEENVVQVITENTPIFKVVGKMLEEKRRHLFWTPCAVYCIDCMLEDFLKIRLVEECMVKGQKITKFIYNHNWLLNVMKNDFTQGQELLRPAVTRCASSFATLQSLLDHRNSLKRLFVSNKWVSCSYSKFDEGKEVEKIVLNTTFWKKVQCVRKSVDPILEILQKVDSGKGLLISSHSEVVRGLNECIVRLEPDNTKRISASMQISDYNSAKADFGTELAVSTRTDLDPAAWWQQHGISCLELQRIAVRVLSQTCTSCSYEQKWSIFDQIRTRRHNLLAHRKFNDLTYVHYNLRLREQRLRKNSSYSISLDSSLLECLLDDWIIATEKQAMQEDEEILEEMEHVDLLENELVDYEDESGQGEGRRGCSEFGTLVGAETLDGSNATNASAGTDSSPELKFYDDDMTMSD 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48346363 48350137 + Bma022135.1 Bma05g00985 83069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00985 847 ProSiteProfiles Zinc finger BED-type profile. 12 68 IPR003656 GO:0003677
Bma05g00985 847 ProSiteProfiles Zinc finger BED-type profile. 136 192 IPR003656 GO:0003677
Bma05g00985 847 Pfam Protein of unknown function (DUF 659) 352 503 IPR007021 -
Bma05g00985 847 MobiDBLite consensus disorder prediction 817 832 - -
Bma05g00985 847 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 612 782 - -
Bma05g00985 847 Pfam hAT family C-terminal dimerisation region 662 732 IPR008906 GO:0046983
Bma05g00985 847 PANTHER OSJNBA0013A04.12 PROTEIN 14 52 - -
Bma05g00985 847 PANTHER OSJNBA0013A04.12 PROTEIN 612 782 - -
Bma05g00985 847 PANTHER OSJNBA0013A04.12 PROTEIN 48 597 - -
Bma05g00985 847 MobiDBLite consensus disorder prediction 817 847 - -
Bma05g00985 847 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 48 597 - -
Bma05g00985 847 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 14 52 - -
Bma05g00985 847 Coils Coil 763 796 - -
Bma05g00985 847 SUPERFAMILY Ribonuclease H-like 382 734 IPR012337 -
Bma05g00985 847 Pfam BED zinc finger 18 53 IPR003656 GO:0003677
Bma05g00985 847 Pfam BED zinc finger 142 177 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00985 - - - dcr:108196330 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00025 Bma-Chr3:280598 Bma05g00985 Bma-Chr5:48346363 6.67E-15 dispersed
Bma03g00139 Bma-Chr3:1053553 Bma05g00985 Bma-Chr5:48346363 2.50E-17 dispersed
Bma05g00985 Bma-Chr5:48346363 Bma14g00425 Bma-Chr14:4988273 7.19E-31 dispersed
Bma05g00985 Bma-Chr5:48346363 Bma08g01109 Bma-Chr8:50064677 3.76E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00985 Bma_Chr05 FPKM 5.343787 5.691114 9.658476 9.150154 4.36319 4.866457 6.7472 12.588867 11.13172 12.119561