Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00993 ATGGCGTCGGGAACCAAAGCGACGTCTTCAATTCAACAAGCGCAGTCCTCGAATACGAATACGAGTATTTTGAGAGCTCAACAAACTGAATCCATTCGGAAAGCCGTTTCCCAGTTCACCGTCGACGCTCGTCTCCATGCAGTCTTCGAGCAGTCAGGTGAGTCTGGTAAGTCTTTCGACTATTCTCAATCTGTGAAAACCACCACACAATCTGTCCCAGAGCAACAAATTACTGCCTACTTGTCCAGAATTCAGAGGGGTGGGCATATTCAGCCCTTTGGGTGTATGATAGCCGTCGATGAGGCCACTTTTCGAGTCATTGCCTACAGCGAAAATGGCCGAGAAATGCTTGGTCTTACTTTTCAATCAGTCCCTAGTCTTGAAAAACCTGAAATTCTTGCAATCGGCACTGATGTTCGTGCATTATTCACACCCTCGAGCTCAATTCTACTGGAGAAGGCATTTGGGGCTCGAGAAATCACATTGTTAAACCCTATTTGGATTCACTCCAAGAATTCAGGCAAGCCCTTTTATGCAATTTTGCATCGGATTGATGTAGGTATTGTTATTGATCTGGAGCCTGCTAGTACTGAGGACCCTGCTTTGTCCATTGCCGGGGCGGTTCAGTCACAGAAGCTAGCTGTGCGCGCAATTTCACAGTTGCAGTCGCTTCCTGGTGGAGATATTAAGCTTTTGTGTGATACTGTTGTTGAAAGTGTGAGTGAACTAACTGGTTACGACAGAGTTATGGTGTATAAATTTCATGACGACGAGCATGGCGAGGTTGTGGCAGAAAGTAAGAGACCAAATTTGGAGCCATATATTGGATTGCACTATCCTGCCACTGATATACCTCAGGCATCACGGTTTCTCTTCAAGCAGAATCGGGTCAGAATGATTGTAGATTGCCATGCTACACCTGTTGGTGTGGTCCAGGATGATGGGCTTATGCAGCCTCTGTGCTTGGTTGGTTCAACACTTCGTGCCTCTCACAAATGTCATTCCCAATATATGGCCAATATGGGTTCCACTGCCTCGTTAGCCATGGCAGTTATTATCAATGGCAATGAGGAGGAAGCGGTAGGAAGGAATTCGTTGAGGTTATGGGGCCTTGTTGTTTGCCATCACACTTCTGCTCGTTGTATCCCATTCCCACTTCGTTATGCTTGCGAGTTCCTAATGCAGGCTTTTGGGCTCCAATTGAATATGGAATTGCAATTGGCTTCACAGCTTTCTGAAAAACATGTTTTGAGGACTCAAACCCTCTTATGCGACATGCTTCTACGTGATTCACCCTCTGGAATTGTTACTCAAAGCCCAAGTATTATGGACCTTGTGAAATGTGATGGGGCAGCACTCTACTATCAGGGAAAATATTACCCATTGGGTGTGACGCCCACTGAATCCCAGATTAGGAACATTGTGGAGTGGTTGTTGGCTATCCATGCTGATTCGACAGGATTAAGCACAGATAGCTTGGCGGATGCTGGGTACCCTGGAGCAGCATCACTGGGTGATGAGGTTTGTGGAATGGCAGTTGCTTATATCACTCAAAGAGATTTTTTGTTCTGGTTTCGATCCCATACTGCGAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCAGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTCTTAGAAGTGGTGAAAAGTCGTAGTTTGCCTTGGGAGAACCCGGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTAAGAGACTCAATTCGACTTGCAGAGGATAATTCTAAGGCGGCGATACATTCCGAGCTTGAGGATCATGAGATTCAATGTATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGAGGGTTGCATAAATGGATGGAATGGGAAGATTGCAGAGTTAACTAGACTACCAGTCGAAGAAGCCATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCAGAACAAACTGTCGATAAGCTTCTCTATCGAGCTTTAAGAGGGGAAGAAGATAACAATGTAGAGATAAAATTAAAGACATTTGGGTTAGAAGATGATAAAAAGCCAGTGTTTGTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCAGGATGTTACTATCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGTGATTACAAGGCCATTGTACATAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGATGATAATACATGTTGCTCAGAGTGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGCGGTTTTTGGCAATTGTTGTAGGCTCAAGGGTCCAGATGCGTTGACAAAATTTATGATTGTCTTGCACAATGCTATTGGAGGTGAGGACACAAATAAGTTTTCATTTTCTTTTTTTGACCGCAATAGGAAATATGTGCAAGCTCTACTAACAGCGAACAAGAGGGTGAATATGGATGGTCAGGTCATTGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACAAGCTCTTAAAGTTCAGAGCCAACAGGAGAAAAAGCGGTCTGTGAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATAAAGAATCCTCTGAGTGGAATAAGGTTTACTAACTCGCTTTTGGAGGGCACAACATTAACTGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTAAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGTTCTTTGGAGCTTGAGAAGGCCGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGTTGAGAGAGAAAAATTTACAGTTGATTCGAGATATACCAGAAGAAGTTAAAACTTTATCAGTCTATGGAGATCAAGTGAGAATTCAACAGGTCTTGGCCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCAGAAGGATGGGTTGGAATTCAAGTGCGGCCAAGCATAAACAAAGTTTCTGAAAGTGTCACTCTTGTGCGTGTCGAATTCAGGATGGTATGCCCCGGCGAAGGTCTTCCCCCTGATTTAGTTCACGACATGTTCAAGAGCAGTCAATGGATGACCAAAGAAGGCCTCGGGCTGAGCATGTGTCGAAAGATTCTGAAGCTCATGAACGGTGACGTCCAGTACATCAGGGAGTCAGAAAGATGCTATTTCTTAACTATTATTGATCTTCCGACCAGTGAACAACATCAACTAGGACATTAG 3384 43.59 MASGTKATSSIQQAQSSNTNTSILRAQQTESIRKAVSQFTVDARLHAVFEQSGESGKSFDYSQSVKTTTQSVPEQQITAYLSRIQRGGHIQPFGCMIAVDEATFRVIAYSENGREMLGLTFQSVPSLEKPEILAIGTDVRALFTPSSSILLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPASTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVSELTGYDRVMVYKFHDDEHGEVVAESKRPNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVGVVQDDGLMQPLCLVGSTLRASHKCHSQYMANMGSTASLAMAVIINGNEEEAVGRNSLRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTESQIRNIVEWLLAIHADSTGLSTDSLADAGYPGAASLGDEVCGMAVAYITQRDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRSLPWENPEMDAIHSLQLILRDSIRLAEDNSKAAIHSELEDHEIQCMDELSSVAREMVRLIETATAPIFAVDVEGCINGWNGKIAELTRLPVEEAMGKSLVYDLVYKESEQTVDKLLYRALRGEEDNNVEIKLKTFGLEDDKKPVFVVVNACSSKDYKNNIVGVCFVGQDVTIQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGAVFGNCCRLKGPDALTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMDGQVIGAFCFLQIASPELQQALKVQSQQEKKRSVRMKELAYICQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSVYGDQVRIQQVLADFLLNMVRYAPSPEGWVGIQVRPSINKVSESVTLVRVEFRMVCPGEGLPPDLVHDMFKSSQWMTKEGLGLSMCRKILKLMNGDVQYIRESERCYFLTIIDLPTSEQHQLGH 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48415383 48420014 + Bma022144.1 Bma05g00993 83077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00993 1127 SMART HisKA_10 894 958 IPR003661 GO:0000155|GO:0007165
Bma05g00993 1127 PRINTS Phytochrome signature 435 455 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 553 571 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 735 755 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 520 539 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 715 732 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Bma05g00993 1127 CDD PAS 630 737 IPR000014 -
Bma05g00993 1127 PIRSF Phytochrome_conventional 9 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma05g00993 1127 ProSiteProfiles PAS repeat profile. 753 801 IPR000014 -
Bma05g00993 1127 Pfam PAS fold 79 195 IPR013654 GO:0006355
Bma05g00993 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1121 - -
Bma05g00993 1127 PANTHER PHYTOCHROME 12 1121 - -
Bma05g00993 1127 TIGRFAM sensory_box: PAS domain S-box protein 626 739 IPR000014 -
Bma05g00993 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 196 IPR035965 -
Bma05g00993 1127 CDD HATPase_Phy-like 1005 1117 IPR044767 -
Bma05g00993 1127 Pfam His Kinase A (phospho-acceptor) domain 899 958 IPR003661 GO:0000155|GO:0007165
Bma05g00993 1127 Pfam PAS fold 622 737 IPR013767 GO:0006355
Bma05g00993 1127 Pfam PAS fold 753 872 IPR013767 GO:0006355
Bma05g00993 1127 MobiDBLite consensus disorder prediction 1 21 - -
Bma05g00993 1127 Gene3D - 875 957 - -
Bma05g00993 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 969 1118 IPR036890 -
Bma05g00993 1127 SMART HKATPase_4 1006 1121 IPR003594 -
Bma05g00993 1127 Pfam Phytochrome region 418 590 IPR013515 GO:0006355|GO:0009584
Bma05g00993 1127 SMART pas_2 621 688 IPR000014 -
Bma05g00993 1127 SMART pas_2 752 822 IPR000014 -
Bma05g00993 1127 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Bma05g00993 1127 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 395 IPR016132 -
Bma05g00993 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 767 870 IPR035965 -
Bma05g00993 1127 Gene3D PAS domain 617 741 - -
Bma05g00993 1127 Gene3D - 209 566 IPR029016 -
Bma05g00993 1127 Gene3D - 958 1122 IPR036890 -
Bma05g00993 1127 Gene3D PAS domain 83 331 - -
Bma05g00993 1127 Gene3D - 410 583 IPR043150 -
Bma05g00993 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 733 IPR035965 -
Bma05g00993 1127 CDD PAS 764 872 IPR000014 -
Bma05g00993 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1108 IPR003594 -
Bma05g00993 1127 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 950 IPR036097 GO:0000155|GO:0007165
Bma05g00993 1127 CDD HisKA 895 950 IPR003661 GO:0000155|GO:0007165
Bma05g00993 1127 Pfam GAF domain 228 405 IPR003018 GO:0005515
Bma05g00993 1127 SUPERFAMILY GAF domain-like 413 590 - -
Bma05g00993 1127 SMART gaf_1 228 415 IPR003018 GO:0005515
Bma05g00993 1127 SUPERFAMILY GAF domain-like 208 402 - -
Bma05g00993 1127 Gene3D PAS domain 766 874 - -
Bma05g00993 1127 ProSiteProfiles Histidine kinase domain profile. 901 1121 IPR005467 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00993 Bma06g01466 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01487 Bma-Chr1:28734629 Bma05g00993 Bma-Chr5:48415383 0 dispersed
Bma05g00993 Bma-Chr5:48415383 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma01g00611 Bma-Chr1:5522148 Bma05g00993 Bma-Chr5:48415383 0 transposed
Bma12g00850 Bma-Chr12:39312161 Bma05g00993 Bma-Chr5:48415383 0 transposed
Bma05g00993 Bma-Chr5:48415383 Bma06g01466 Bma-Chr6:51314368 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00993 K12121 - zju:107418995 1926.75