Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00998 ATGGCGTCGTCTCTGATTTTGAATCCAGTGATTAACTCTGACCGCTCACGTGAATCTTCCAGAAGGAAAAAAAAGAAGAAAACTCAAATGAATCTAGATCGTAATCGAGATCAAAGCAATATCAGATGGAAATCTGAAGTGCAGCAGCAAATCTACACGTCCAAGCTCGTTCAAGCGCTGAGCCAAGTGAGGCTCAGCCCCTCTGTTTCGTCTCCGAGCGAAGCTCCTCGCCTCGGCCAAGCTGTCCACGAGGCCGCCGATGGAGTCTTAGCCGTTGCTGCGAAGGGGAAAACTCTATGGAGCCGATCGATCTTAACGAACCGTCTGAAGCTCAAATTCTCGAAGCGGAGAAGGCGAAGAGTCTCCTCCGCTGCCAATAACCGCTCAAAGAAACCCCGAGTGAGCGTTTTGCGTTTGAAAGGCAAGTCTCCACCTGCGGTTGAGAGAAGAGTTCGGCTTCTCGGACGTTTGGTTCCCGGTTGCAGGAAGCAACCGTGTCCGGTGATTCTAGAAGAAGCCACTGATTATATAGCCGCCCTTGAGATGCAGGTCCGAGCCATGACTGCTCTCGCACAGTTACTCTCTGGTTCTGGTTCCTCCTCATCACCGCCAAGCTGA 618 51.62 MASSLILNPVINSDRSRESSRRKKKKKTQMNLDRNRDQSNIRWKSEVQQQIYTSKLVQALSQVRLSPSVSSPSEAPRLGQAVHEAADGVLAVAAKGKTLWSRSILTNRLKLKFSKRRRRRVSSAANNRSKKPRVSVLRLKGKSPPAVERRVRLLGRLVPGCRKQPCPVILEEATDYIAALEMQVRAMTALAQLLSGSGSSSSPPS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48461233 48461850 + Bma022151.1 Bma05g00998 83082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00998 205 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 7 202 IPR044660 GO:0006355
Bma05g00998 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 195 IPR036638 GO:0046983
Bma05g00998 205 MobiDBLite consensus disorder prediction 1 39 - -
Bma05g00998 205 MobiDBLite consensus disorder prediction 116 137 - -
Bma05g00998 205 CDD bHLH_AtIBH1_like 136 191 IPR044549 GO:0006355
Bma05g00998 205 PANTHER TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 7 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01120 Bma-Chr4:26808642 Bma05g00998 Bma-Chr5:48461233 4.20E-90 dispersed
Bma05g00257 Bma-Chr5:7123277 Bma05g00998 Bma-Chr5:48461233 2.56E-43 dispersed
Bma05g00259 Bma-Chr5:7230473 Bma05g00998 Bma-Chr5:48461233 5.80E-44 dispersed
Bma05g00998 Bma-Chr5:48461233 Bma06g01459 Bma-Chr6:51276438 5.53E-51 dispersed
Bma05g00998 Bma-Chr5:48461233 Bma02g00933 Bma-Chr2:49184765 1.23E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00998 - - vvi:100243127 208.764