Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01000 ATGAATTACCATCAGAATCGCCGTAGCCCACGCGAATTTAGAGTTGGAGGGAACGGCGACCCCCGTTTTTTCGATGGTTTGCATGGTCAATCTCCTGGAGGTGGCGGTGGGTTTTGGCCAATGGGTGGGGAAGGTGGTGGATTGAGGCCTATTGGTGATGGTAGAGGATTTGGGTTTAATCACCAAGCGCCGCATATGGTGGGACAAAAACGAGGGTATCCTTTCCTGGGACGGGGAGAATCTCCAGATCATCTTGACAATAGTAATTTTGCAAAGCTTTTTGTTGGATCTGTTCCGCGGACAGCCACAGAAGAAGATATTCGTCTGTTGTTTGAAAGACATGGGAATGTGATGGAAGTAGCATTGATTAAAGATAAGAGAACGGGGCAGCAACAAGGTGATTTCTGTCTTTTACAAACCATTTGCAGTCATACAGATTTTATTTCAGGTTTTCCAAGAGGCTGA 465 46.24 MNYHQNRRSPREFRVGGNGDPRFFDGLHGQSPGGGGGFWPMGGEGGGLRPIGDGRGFGFNHQAPHMVGQKRGYPFLGRGESPDHLDNSNFAKLFVGSVPRTATEEDIRLLFERHGNVMEVALIKDKRTGQQQGDFCLLQTICSHTDFISGFPRG 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48491326 48492400 - Bma022154.1 Bma05g01000 83084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01000 154 Gene3D - 88 137 IPR012677 -
Bma05g01000 154 SUPERFAMILY RNA-binding domain, RBD 54 133 IPR035979 GO:0003676
Bma05g01000 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 133 IPR000504 GO:0003723
Bma05g01000 154 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 133 - -
Bma05g01000 154 PANTHER FCA 3 133 - -
Bma05g01000 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 133 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01000 - - - cmos:111460217 148.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01118 Bma05g01000 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01118 Bma-Chr4:26462746 Bma05g01000 Bma-Chr5:48491326 1.36E-56 dispersed
Bma05g01000 Bma-Chr5:48491326 Bma02g01124 Bma-Chr2:52964913 1.56E-06 dispersed
Bma05g00999 Bma-Chr5:48480901 Bma05g01000 Bma-Chr5:48491326 7.89E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021526 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01000 Bma_Chr05 FPKM 5.400676 7.717578 16.0418 15.527617 21.817196 20.784124 20.04896 22.596651 20.032816 21.731546