Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01001 TACCAAAAAATGGATTCTATCAATTCAAGACGGAGAGATTTTGATAATGATCTTGAAAGTGGCGAGATTGGTAGCAATGAAGGTGCAAGCAAAGTGCCAATTTCGAATGTAAAAGCACAGGCGAAAACGTTGTTTGGTAATATCTGCGAGGAGTTTGTTGATGGGTTCACCAAGAGTGAAGGACTTAGTCTGTGTGCTAATGTCCATAGCATGTCTGCTGATAATGTCACGATACAGATAGTGACAAACACGGGGATTGAAGAAGCAGAAACATTGGATCAGTCAGAAAAGACAAACGCGAAGGAGAAGAGGAAATTACCTGGGAAGAAAAAGGCTGCAAGACCTCCAAGACCTCCAAGAGGTCCATCATTGGACGCTGCAGATCAGAAGCTAATAAAGGAGATCTCTGAACTTGCAATGCTAAAACGAGCAAGGATTGAGCGGATGAGAGCCTTGAAGAAAGCCAAAGCTGCAAAGGCGTTATCTTCGAACAGCAATGTATTTGCGATGGTGTTCACCATGCTGTTCTGTTTTGTGATAATTTTTCAAGGTAATAATTTCTAA 564 41.67 YQKMDSINSRRRDFDNDLESGEIGSNEGASKVPISNVKAQAKTLFGNICEEFVDGFTKSEGLSLCANVHSMSADNVTIQIVTNTGIEEAETLDQSEKTNAKEKRKLPGKKKAARPPRPPRGPSLDAADQKLIKEISELAMLKRARIERMRALKKAKAAKALSSNSNVFAMVFTMLFCFVIIFQGNNF 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48496707 48497270 + Bma022155.1 Bma05g01001 83085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01001 187 MobiDBLite consensus disorder prediction 91 126 - -
Bma05g01001 187 MobiDBLite consensus disorder prediction 1 19 - -
Bma05g01001 187 MobiDBLite consensus disorder prediction 1 30 - -
Bma05g01001 187 PANTHER OS01G0299500 PROTEIN 4 184 - -
Bma05g01001 187 Coils Coil 141 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01001 - - - qlo:115995485 168.318
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g42 Blo01g00038 . . Bda08g00326 . . . Bma05g01001 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0092 . . . . . . . . . Bpe05g00802 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016665 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01001 Bma_Chr05 FPKM 16.405634 16.882437 21.18755 19.406879 16.551811 12.224221 17.192904 26.802061 27.418739 29.423517