Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01003 ATGCTGTCTTCTAACTTCTTGCCGTTGCTTCTTCTTCTTCTTCTTCATGGTTTTGAAACTCAGTCTCCTAATCGTTATGTTGAAGCTCGAACCTCTATTGCAAACATATTAGATGATGGTCTCTCTTTGATGGATTTCAAGTCCACCATTGAAGATCCTTTTGGAGCTCTTCGTTCCTGGAACGATTCTCTCCATTTTTGCAGATGGGAAGGAGTCACTTGCGGCCGTCGCCATCGACGAGTCACCATTTTGGACCTCAGCCGTAAAAGCTTGGACGGTTCTTTGTCTCCTTCTTTAGGCAACCTCACTTTTCTTAGATATATATATTTACAGGACAACACATTTCATGGTAGAATCCCGGAGGAGATAGGTCGTCTATCCAGATTGGAAGTTTTGTTTCTGCAAAACAACTCATTGAACGGAGAGATCCCTAGAAATCTCTCTCGTTGCTCCAAGCTCTTATTTTTGAAACTTGGCCATAACAATCTATTCGGTGACTTTCCGATTGAGATATTTGACATTTCTGGCCTTAAATTCCTAGCTTTTAACAGCAACAATATCACAGGAGTTATACCTTCTGCTATAGCAAATCTCACTTCATTAGATGCATTCTCCATTTCATACAATCATTTAGGTGGAGGCATACCCTCCTCGATCGGCCTTCTCAGAAACTTGAAGTTCTTAGTATTAGGCGGAAATCGCCTTTCAGGCGTCTTACCTTCATCTATGTACAATCTTTCATCGATCGAAGTTTTCTCCGTTGCAAGTAATCAACTTCATGGAAGCCTACTGCCTGACATAGGCCACTCTTTCCCTGAGCTTAGCTACTTCCAAATCGGCGGTAATAACTTTACAGGTCATGTTCCTCTCTCCTTTTCCAATGCTTCAAACATTGAGTATTTTGAATTAGTTGAGAACAACTTCTTTGGAAAAGTGAGTATTGATTTTGGTGGCGCCAAAAACTTATCAGCGCTGATTTTAGAAGGTAATCACCTCGGAAGTGGTGATCCTGACGAACTGGATTTTCTAAGCTCATTGGCGAATTGCAGCAAGCTATATCGACTGAGTTTGTTTGACAACTCATTTAGAGGAGCATTGCCTAGTTCGTTGGCCAACCTTTCCTCTCATCTCCGACTGTTTGAGGTCGGACAAAATCAATTGTTTGGTGAAATACCATCAGGAATTGGCAATCTCGTGGGCTTAAGTTTTTTAGATTTGCAAATCAACGAGCTTATTGGAGAATTGCCCTCTGACATTGGTAGACTTCTGAACTTGAGAATTTTCAATGCAACTTCAAATGGTCTTTCGGGAGAACTTCCTTCTGCCATTGGAAACTTAACAAAATTAATCAAACTTGACCTACAGATTAATAATTTTCATGGAGGCATTCCACGGAGCATTGAAAACTGCCAGGAGCTGTCCTTCTTGTCACTTCGCATGAATAATCTTAGTGGCAGCCTTCCTGAACAAGTTTTTGACTTTCCAAACTTAGGACAGGCGCTGGATTTATCTGACAACAAGTTTAGTGGAGAATTGCCTAATAAAATCAATAGTCTAAAAATATTGACTTCATTAGATTTATCTGGTAATCAACTTTCTGGAAATATTCCGAGTGAACTTGGCGATTGCGTAAGTTTGGAATATCTCGCCATGCAAGGGAATTACTTCCAGGGATCTATTCCTCCAACCTTGAGTTCGTTGAGTGACCTTCGACAACTTGATCTTTCTAACAACAATTTGTCTGGTCAAGTTCCAGATTTCCTGTCAATTTTTTCGCTCACTTATTTGAACTTATCTTTCAATAATTTTGAGGGTGAGGTTCCAACTAATGGAGTTTTTTCAAATGCATCTTTGTTCTCATTGCTCGGGAATGAGAGACTCTGTGGTGGAATCACTGCTCTGCGCCTGCCAAACTGTACTCATGAAGCAAGTACTCATGAAGCAAGTAAGAAGCCAAAATTGACCAAGCTTCTGAAAATTATTCTATCTCTATGCATTTGTCTCTTCGCCTTGGCTGCAATATCATTCTTTTTACTCTGTTTGGTTACTAAGAAAAAGAGAAAGAAAGCAGAAGCATCAAAATTGGAAGACTCATTATTCCTAGATGTGTCATACAGCGACCTCCTTAAAGCAACAAATAATTTCTCTTCGGATAATTTGATTGGGAATGGATACTTCAGCTCTGTATATAATGGTTTCCTTGAAAAGATAGGAGAAAGTGTCGCAATTAAAGTGCTTAATCTTGAACGCCACGGAGCAGTGAGAAGTTTTGCATCAGAATGCGAAGTGTTGAGAAATATTCGTCACAGAAATCTATTGAAAATAATAACTTCATGCTCCACCATTGATTTCCATGGAAATGATTTCAAAGCTCTTGTTTATGAATTCATAGCTAATGGAAGTCTAGATTCATGGCTGCATGTTAGCACCAGTCCAAATCGAGAGGGAGGAGAACTGAAATTTCTTCAGCGTGTAAATATTGCAATTGATGTGGCTACAGGACTCGATTACCTTCACAAGCATTGTCATATCCCAATCGTTCATTGCGATTTGAAGCCGAGCAACATTCTTCTAGACGAAGACATGACCGCCCATATTGGAGATTTTGGGCTAACAAAACTTCTTCCTGAACTGACAAACTTTACTGAAAATAGCTCGATCGGAATACGAGGAACAATTGGTTACGCTGCTCCAGGTATGACTAACAACCAATGTATAATTTATTTCACATGTTTTATTATCAATATGTTAACTAATAGAAATTTTATGAATGCAGAATATGGTCAAGGAAGTGAAGTTTCCACTCAGGGTGACATCTACAGCTACGGAATTCTACTATTAGAGATGATAACAAGAAAAAGACCAACTGATGAGATGTTCGTTGAAGGACTAGACCTCCATTCTTATGCTAGGAGGGCACTATCTAGCCAAGTACTTGACATTGTTGATCCATGCCTCTTGCCTAGTAATGAATCAGAGAAGACTAAAACGATAAACTCTTTGGTTTCTATGGTAAAGCTCGGAGTGGCGTGTTCGGCGAAATATCCACGAGAACGGATTGACGCCAAAAGCATTTGTCATGAGCTGCGAATAGTAAGAAATTCTTTGCTCGAATCGAACAATCCTTAA 3129 39.69 MLSSNFLPLLLLLLLHGFETQSPNRYVEARTSIANILDDGLSLMDFKSTIEDPFGALRSWNDSLHFCRWEGVTCGRRHRRVTILDLSRKSLDGSLSPSLGNLTFLRYIYLQDNTFHGRIPEEIGRLSRLEVLFLQNNSLNGEIPRNLSRCSKLLFLKLGHNNLFGDFPIEIFDISGLKFLAFNSNNITGVIPSAIANLTSLDAFSISYNHLGGGIPSSIGLLRNLKFLVLGGNRLSGVLPSSMYNLSSIEVFSVASNQLHGSLLPDIGHSFPELSYFQIGGNNFTGHVPLSFSNASNIEYFELVENNFFGKVSIDFGGAKNLSALILEGNHLGSGDPDELDFLSSLANCSKLYRLSLFDNSFRGALPSSLANLSSHLRLFEVGQNQLFGEIPSGIGNLVGLSFLDLQINELIGELPSDIGRLLNLRIFNATSNGLSGELPSAIGNLTKLIKLDLQINNFHGGIPRSIENCQELSFLSLRMNNLSGSLPEQVFDFPNLGQALDLSDNKFSGELPNKINSLKILTSLDLSGNQLSGNIPSELGDCVSLEYLAMQGNYFQGSIPPTLSSLSDLRQLDLSNNNLSGQVPDFLSIFSLTYLNLSFNNFEGEVPTNGVFSNASLFSLLGNERLCGGITALRLPNCTHEASTHEASKKPKLTKLLKIILSLCICLFALAAISFFLLCLVTKKKRKKAEASKLEDSLFLDVSYSDLLKATNNFSSDNLIGNGYFSSVYNGFLEKIGESVAIKVLNLERHGAVRSFASECEVLRNIRHRNLLKIITSCSTIDFHGNDFKALVYEFIANGSLDSWLHVSTSPNREGGELKFLQRVNIAIDVATGLDYLHKHCHIPIVHCDLKPSNILLDEDMTAHIGDFGLTKLLPELTNFTENSSIGIRGTIGYAAPGMTNNQCIIYFTCFIINMLTNRNFMNAEYGQGSEVSTQGDIYSYGILLLEMITRKRPTDEMFVEGLDLHSYARRALSSQVLDIVDPCLLPSNESEKTKTINSLVSMVKLGVACSAKYPRERIDAKSICHELRIVRNSLLESNNP 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48505178 48508306 + Bma022157.1 Bma05g01003 83087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01003 1042 Gene3D Ribonuclease Inhibitor 345 648 IPR032675 -
Bma05g01003 1042 Gene3D Transferase(Phosphotransferase) domain 1 797 1040 - -
Bma05g01003 1042 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 28 1037 - -
Bma05g01003 1042 Pfam Protein kinase domain 717 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g01003 1042 ProSiteProfiles Protein kinase domain profile. 715 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g01003 1042 Gene3D Ribonuclease Inhibitor 263 344 IPR032675 -
Bma05g01003 1042 SUPERFAMILY Protein kinase-like (PK-like) 698 1029 IPR011009 -
Bma05g01003 1042 Gene3D Phosphorylase Kinase; domain 1 679 796 - -
Bma05g01003 1042 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Bma05g01003 1042 SUPERFAMILY L domain-like 349 629 - -
Bma05g01003 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Bma05g01003 1042 Gene3D Ribonuclease Inhibitor 165 262 IPR032675 -
Bma05g01003 1042 PRINTS Leucine-rich repeat signature 522 535 - -
Bma05g01003 1042 PRINTS Leucine-rich repeat signature 567 580 - -
Bma05g01003 1042 SMART LRR_typ_2 567 589 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 222 245 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 590 615 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 398 422 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 126 150 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 519 543 IPR003591 -
Bma05g01003 1042 SMART LRR_typ_2 446 470 IPR003591 -
Bma05g01003 1042 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 28 1037 - -
Bma05g01003 1042 Pfam Leucine rich repeat N-terminal domain 38 74 IPR013210 -
Bma05g01003 1042 SUPERFAMILY L domain-like 38 332 - -
Bma05g01003 1042 SMART serkin_6 715 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g01003 1042 Gene3D Ribonuclease Inhibitor 41 154 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01003 Bma-Chr5:48505178 Bma07g01113 Bma-Chr7:44427910 1.07E-25 dispersed
Bma05g01003 Bma-Chr5:48505178 Bma07g01130 Bma-Chr7:45073523 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66510 PF00069 Pkinase 1.50E-35 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01003 - - csin:114298217 986.482