Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01009 ATGATAGTGAAGGCCTGCGAAGACTACGGATTTTTCAAGGTCATCAACCATGGAGTTTCTGACGACGTAGTTGCCCAGCTCGAGGAAGAAAGCTTCAAGTTTTTCGCTAAACCACAGTCAGAAAAACAAGCAGCCGGGCCGGCAAATCCCTTTGGCTATGGCTGCAAAACAATCGGCTTCAATGGCGACGTCGGAGAAGTTGAATATCTTCTTTTCAATACGAATCCTCTCTCCATTTCTCAGATGTCCAAAACTATCTCCAACGATCCAGTAAAATTCAGCTCTGCTTTGAGTGGATATATGGAGGGAGTTGAGGGCTTAGCATGTGAGATATTGGATTTGATTGCAGAAGGGCTGTGGGTCCCAGACACTCAAGTTTTCAGCAGACTCATCAGAGACGTTGACAGCGACTCAGTTCTCAGGCTCAATCACTACCCGCCTGTGATCAAACGCTGCAGAGATATGGATACGTCAGCATCCGAAGTTGGGTTTGGAGAGCATTCTGACCCTCAGATCTTGACCCTACTTCGATCCAACGACGTGGGTGGCCTCCAGATCTCCACTCTCGATGGGGTGTGGGTCCCTGTCTCTCCTGACCCCGCTGCCTTCTGTGTTAATGTTGGCGATGCGTTGCAGGCGATGACGAACGGGAGATTCGTGAGCGTGAGACATAGGGCCATGACGAACCACCACAAGGCGAGGCTTTCGATAGCGTATTTCGGGGCACCGCGGCTGCAGCAGAGCATAATTGCGGTGCCGGAGGTGGCGGAAAGGAGGCCATGTCTCTACCGGCCGTTCACTTGGGCGGAGTACAAGAAGACTACCTATTCACTTAGGCTGGGAGACACTAGGCTTTCACTTTTTAAAACTGGGTCTTAA 879 50.74 MIVKACEDYGFFKVINHGVSDDVVAQLEEESFKFFAKPQSEKQAAGPANPFGYGCKTIGFNGDVGEVEYLLFNTNPLSISQMSKTISNDPVKFSSALSGYMEGVEGLACEILDLIAEGLWVPDTQVFSRLIRDVDSDSVLRLNHYPPVIKRCRDMDTSASEVGFGEHSDPQILTLLRSNDVGGLQISTLDGVWVPVSPDPAAFCVNVGDALQAMTNGRFVSVRHRAMTNHHKARLSIAYFGAPRLQQSIIAVPEVAERRPCLYRPFTWAEYKKTTYSLRLGDTRLSLFKTGS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48555968 48558717 + Bma022163.1 Bma05g01009 83093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01009 292 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 290 - -
Bma05g01009 292 SUPERFAMILY Clavaminate synthase-like 2 282 - -
Bma05g01009 292 Pfam 2OG-Fe(II) oxygenase superfamily 137 241 IPR044861 -
Bma05g01009 292 PRINTS Isopenicillin N synthase signature 167 188 - -
Bma05g01009 292 PRINTS Isopenicillin N synthase signature 2 19 - -
Bma05g01009 292 PRINTS Isopenicillin N synthase signature 203 229 - -
Bma05g01009 292 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 135 243 IPR005123 -
Bma05g01009 292 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 1 290 - -
Bma05g01009 292 Pfam non-haem dioxygenase in morphine synthesis N-terminal 2 53 IPR026992 -
Bma05g01009 292 Gene3D - 1 279 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01009 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - tcc:18603710 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01009 Bma-Chr5:48555968 Bma10g00944 Bma-Chr10:20049052 6.33E-125 dispersed
Bma05g01009 Bma-Chr5:48555968 Bma13g00902 Bma-Chr13:39168947 1.44E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g30 Blo01g00042 . . Bda08g00321 . . . Bma05g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001435 2 2 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 6 3 2 2 2 2 3 4 2 2 2 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01009 Bma_Chr05 FPKM 8.805794 9.969258 10.837363 11.868871 12.926197 15.497216 13.804135 11.729276 10.725078 12.09799