Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01010 ATGGACTTTTCTGGCGATCCATCCACTCGGAAACGCGTCGATTTGGGAGGTCGAAGTTCAAAAGAAAGAGATAGGCAGAAGCTTCTGGATCAGATGAAGTTTGAGCGAAACCGCCGGTGGCAGTTGCGGCAGCAAAATTCAGCTGCACTCAAAATTCAGAAATGCTTCAGAGGGAGAAGGGCTTCGGAAGCTGCTCATTCTATGGTGCGAGAGGAATTTTATGCGTCCTATGGGAAGAATTGCCAATATGTAGACAGGCACTGTTTTGGTCCTGATTCAGAGTTCCTCCGTCAGTTACTTTTTTTCTTTAACACCGATAATGCTGGTGATTTTTCAATTCTTGTATATACATGCCGATTACTATCAAAATATCTTCAAGATGATGGGGATATTGCGAGTCTATTTGCACGTGCTGATTATTGGAAAAAGCAAGCTCTAGTGGACTTCAGAGTAAAGAAGCTTGCATATGCTTGTATTCAAGCTTTATATCAGACTAGAAACCAATGGAGGAGCCAAATTTTTGTAACACCAGAGGATTCCATGGCATCAAATACCACTCTGCTGTTTGAAGCAGTAGCCTCCTTGTTAAATCCCCAACTTCCTTGGGTTTGTAAGACAGTTAGCTATTTGCTAGATAGAAACGTGTACGCTCTTGTTAGAGAAATCATTCTTGCTGAGAAGAGAAATACGAAGGTTCACGGCTCAATTGTTCAAGTGTCTTCAATAGAGCGGGTGCTTGGTTTAATGACAATGCACATTGGCGAGAAGCCTTGTAGTTGCACTAATACAGACCCCCGTTGGAATTTCTCTTCCCAGATTCTTAGTATTCCTTTATCATGGAAGATATTCCCTTACTTGAAGGAAGTTTTTGCCAAGAGAGGGTTGATCCAACATTACATTCATCAGATGGCATTGTGTGCTAGAAATTATGATACACTACTCCCAAAGGACGTGGCACCCGATTTTCCTGGTTATGCATGTCTTCTTGGAAATATGTTAGAAGTTGCTGGGATCACTTTATCACACCCTGACTGTACATTTGAAATGGCTGTAGACCTTGCCTCTGGTGCAACGTCCTTGTTGCAGGCATTTCCATCAATAAAACCATCAAATAGAGAAACTAAAGAAAGTTCGGCATATGAGGATGATATTAATGTGGCTGATGAAGAAATGGTGTTGAATAAAGATGTGGAAAAACAGATACACGATGCCATAGATTCACGTTTTCTTTTGCAATTGACAAATGTTTTATTTGGAGGGATTTCACATGTTAGCGGGTCCTATACTGTTCCTTATGATAAAGAGGTTGCAGCAGTCGGTGCAGCTTGTGCATTCCTACATGTCACTTTCAACACTTTGCCTCTGGAGCGAATCATGACTGTTTTGGCGTACAGAACTGAGCTAGTTCCAGTTCTTTGGAATTTTATCAAGCGGTGCCAAGAAAATAAAAAATGGCCGCACTTGACAGAGACAATAAAGTATTCACCAGGAGATACACCTGGTTGGCTACTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGCTTACGATTATTGATAATGAGGAGTTCTATGAGCAGGAAAAGCCATTATCATTGAAGGATATAAGATATTTAATCATTATTTTGAGACAGTCCTTATGGCAGCTTCTATGGGTGATTCCTACAGCTGCTGGTTATTCTGGTAAATCTCTTAACAATACTTCTGCTACTAAGTTGCAGCCAGTGGAATATATTCAATACAGGGTCAGCCTTGTAGTTTCAGAGCTCTTATGTCAGCTGCAAGATTGGAACAGCAGAAGACAATTTGCGCCCCAGAGCGATTTCCATGCTGATGGTGTCAATGAATTTTTTATTTCACAGGCTCTGGTTGAAAATACTCGAGCAAATGACATTCTGAAGCAAGCTCCTTTTTTGGTACCATTTACGAGCAGAGTTAAAATATTCACGTCACAATTAGCTGCAGTTAAGCAACGGCATGATTCTCATGCTGTTTTTGCCAGAAATCGCTTCAGAATTCGACGAAATCGAATATTGGAAGATGCTTATTCTCAGATGAGTGCGTTGTCTGAAGACGATCTACGTGGATTGATTCGTGTAACATTTGTTAATGAGTTTGGAGTTGAGGAGGCCGGCATTGATGGAGGAGGTATTTTCAAAGATTTCATGGAGAACATCACTCGTGCAGCTTTTGATGTCCAGTATGGTTTATTTAAGGAAACTGCTGATCACTTACTTTATCCCAACCCTGGATCAGGAATGATACACGAGCAGCACCTTCAATTTTTTCATTTCCTCGGTTCTCTCCTTGCAAAGGCAATGTTTGAAGGAATTCTTGTTGATATTCCATTTGCAACATTCTTCTTGAGCAAGTTAAAACAGACGTACAACTATTTAAATGATTTACCGTCATTGGATCCAGAGTTGTATCGCCACCTTATTTTCTTAAAGCATTTCGACGGTGACATTTCAGACTTGGAACTGTACTTCGTCATTGTAAATAATGAATATGGAGAGCAAAAAGAAGAAGAGCTGCTTCCTGGAGGAAAAGATCATCGTGTTACCAATGAAAATGTTATCACATTCATTCATCTGGTTTCAAATCACCGCTTAAATTTTCAGATACGGCAACAAAGTTCTCACTTCTTAAGAGGTTTTCAGCAGCTTATACAGAAAGAATGGATTGATATGTTTAATGAACACGAACTTCAGCTTCTAATATCTGGTTCACTTGAGAGCTTGGATGTTGATGATTTAAGATCAAATACCAATTACGCGGGTGGCTATCATAAAGAGCACTATGTCATTGAGATGTTTTGGGAAGTACTCAAAAGCTTTACCGTTGAAAACCAAAAGAAATTTCTGAAGTTCGTTACTGGGTGCTCTCGAGGACCATTGCTTGGATTCAAATATCTTGAGCCGTTATTTTGCATACAAAGGGCTGCTGGTAGTGCTAATGAAGAAGCGCTTGACCGTTTACCTACATCAGCTACTTGTATGAATCTTCTAAAGTTGCCCCCTTATGGAAGCAAAGAGCAACTCGCTACAAAATTGCTTTATGCGATAAATGCAGACGCGGGGTTTGATTTAAGCTGA 3099 40.4 MDFSGDPSTRKRVDLGGRSSKERDRQKLLDQMKFERNRRWQLRQQNSAALKIQKCFRGRRASEAAHSMVREEFYASYGKNCQYVDRHCFGPDSEFLRQLLFFFNTDNAGDFSILVYTCRLLSKYLQDDGDIASLFARADYWKKQALVDFRVKKLAYACIQALYQTRNQWRSQIFVTPEDSMASNTTLLFEAVASLLNPQLPWVCKTVSYLLDRNVYALVREIILAEKRNTKVHGSIVQVSSIERVLGLMTMHIGEKPCSCTNTDPRWNFSSQILSIPLSWKIFPYLKEVFAKRGLIQHYIHQMALCARNYDTLLPKDVAPDFPGYACLLGNMLEVAGITLSHPDCTFEMAVDLASGATSLLQAFPSIKPSNRETKESSAYEDDINVADEEMVLNKDVEKQIHDAIDSRFLLQLTNVLFGGISHVSGSYTVPYDKEVAAVGAACAFLHVTFNTLPLERIMTVLAYRTELVPVLWNFIKRCQENKKWPHLTETIKYSPGDTPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRYLIIILRQSLWQLLWVIPTAAGYSGKSLNNTSATKLQPVEYIQYRVSLVVSELLCQLQDWNSRRQFAPQSDFHADGVNEFFISQALVENTRANDILKQAPFLVPFTSRVKIFTSQLAAVKQRHDSHAVFARNRFRIRRNRILEDAYSQMSALSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEGILVDIPFATFFLSKLKQTYNYLNDLPSLDPELYRHLIFLKHFDGDISDLELYFVIVNNEYGEQKEEELLPGGKDHRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHELQLLISGSLESLDVDDLRSNTNYAGGYHKEHYVIEMFWEVLKSFTVENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSANEEALDRLPTSATCMNLLKLPPYGSKEQLATKLLYAINADAGFDLS 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48579649 48599261 + Bma022165.1 Bma05g01010 83094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01010 1032 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
Bma05g01010 1032 CDD HECTc 680 1030 IPR000569 GO:0004842
Bma05g01010 1032 Pfam HECT-domain (ubiquitin-transferase) 727 1032 IPR000569 GO:0004842
Bma05g01010 1032 Gene3D Hect, E3 ligase catalytic domains 672 910 - -
Bma05g01010 1032 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1032 IPR044611 GO:0000209|GO:0061630
Bma05g01010 1032 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Bma05g01010 1032 Gene3D Hect, E3 ligase catalytic domain 914 1031 - -
Bma05g01010 1032 MobiDBLite consensus disorder prediction 1 26 - -
Bma05g01010 1032 ProSiteProfiles HECT domain profile. 691 1032 IPR000569 GO:0004842
Bma05g01010 1032 PANTHER BNAC01G43970D PROTEIN 1 1032 - -
Bma05g01010 1032 SUPERFAMILY Hect, E3 ligase catalytic domain 666 1024 IPR035983 GO:0004842
Bma05g01010 1032 SMART hect_3 689 1032 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01010 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - qsu:112022332 1598.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01010 Bma-Chr5:48579649 Bma13g01122 Bma-Chr13:44317846 2.36E-65 dispersed
Bma05g01010 Bma-Chr5:48579649 Bma04g01608 Bma-Chr4:52012018 1.01E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01010 Bma_Chr05 FPKM 8.069463 9.359025 11.131506 11.510856 14.043257 12.306824 15.305276 8.953788 7.721658 9.092581