Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01011 ATGGTGAAGGTACGGATGAACACGGCCGATGTGGCCGCTGAGGTGAAGTGCTTGCGAAGACTGATAGGCATGCGCTGTTCTAACGTCTATGATCTCTCTCCTAAGACGTACATGTTCAAGCTCATGAATAGTAGCGGCCTCACCGAATCGGGAGAGAGTGAGAAAGTTTTATTGTTGATTGAAAGCGGTGTCAGATTGCATACTACTGCTTATATTCGGGACAAAAGTAATACTCCATCTGGATTCACTCTAAAACTGAGAAAACATATACGTACAAGAAGGCTTGAGGATGTACGGCAACTCGGATATGATAGGATTGTTCTATTTCAATTTGGACTTGGGGCTAGTGCACACTATGTTATCTTGGAGCTGTATGCCCAAGGAAACATTCTCCTCACTGATTCTGATTTCATGGTCTTGACTCTACTGCGATCACATAGGGATGATAATAAGGGGGTTGCAATTATGTCACGACATCGTTATCCAACAGAAATTTCTCGAGTTTTTGAAAGAACGAGTATTTCAAAATTACAGACAGCGCTCATGTCTTCTCAGGAGCCTGGTGCTGAAGAGAATGTTCCAAACAGTGAAGATGGAAATCATATATTACTTTCAGCAAATGAAAATCAGGGGAACCACAAAAGTGGAAAGCCTTCCAAGCTGGGTAAAACTCAGTTTGACGGTGGTCGTGCCAAACAAGCCACTTTGAAAATTTATGATGAATTTTGCCCTGTTTTATTGAATCAATTCATGTCCAGGGAAAATCGTGTGCAAACTCTGAAACAAGAAGTTGATAGATGTGTTAAAATGGCTGAATTGATTGAATACAATTTAGATGATGTGGATGCTGCTATATTAGCTGTACGCATTGCCATTGCAAAGGGCATGAGTTGGGGTGATCTTACTCGTATGGTGAAAGAAGAGAAGAAATCTGGGAATCCTGTGGCTGGCCTTATCGACAAACTTTATCTAGAAAGGAATTGCATGACTTTGCTGTTGAGCAACAACCTTGATGAAATGGATGATGACGAGAAGACACTTCCAGTTGAAGTTGATCTGTCACATAATGCACACAGCAATGCTAGACGATGGTATGAACAGAAGAAAAAACAGGAAAGCAAGCAAGAGAAGACTGTCACAGCTCATGAAAAGGCATTTAAAGCTGCTGAAAGAAAAACTCGGCTTCAGCTTTCCCAGCAGGAAAAAACTGTAGCAACAATTTCTCACATGCGCAAAGTTCATTGGTTTGAAAAATTTAATTGGTTCATTAGCAGCGAGAACTATTTGGTTATCAGTGGACGTGATGCACAACAAAATGAGATGATAGTGAAACGATACATGTCGAAAGGAGATCTGTATGTCCATGCTGATCTGCATGGGGCTTCTAGTACAGTAATAAAGAATCACAGGCCGGAACAACCTGTTCCTCCTCTTACTTTAAACCAAACAGGATGTTTTACAGTTTGCCACAGCCAAGCATGGGATTCAAAAATGGTCACTAGTGCTTGGTGGGTTTATCCCCATCAGGTCAGTAAAACTGCCCCTACAGGAGAATACCTTACAGTCGGGAGTTTCATGATCCGTGGGAAAAAGAATTTTCTTCCTCCACACCCTCTTATTATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCCTTGGGAACACATTTAAATGAAAGAAGAGTGAGAGGTGAGGAAGAAGGAATGGATGAAATTACAGAAAGTGGGACTGTAATTGAGGAATCTGATTCTGACTCAGAGAAAGAACGCGATGACATAAATGCTCGTATGAGTAATTCTACAGAGGGTCCTTCCAGTAATAATAACAGAACTATTTCTGATACCAAAGCTTCTAATGCGTTGACTGATAAATATGTTGGAAACAATATGACCTTGAATATTTCAGATGAGGATAATGTACCTGATATTAAATATGTTTCTTCCCCACAACTTGAGGATCTTATTGATAGAGCTCTTGAACTTGGATCTGCTGCGACAAGCAGTAAAATTTATGGACATCAGACTTCTCAGGTTGATAATCCTGAAGACCAAAAAGCTACTGCCAGAGAGAAACCTTACATTTCAAAAGCTGAAAGGAGAAAGCTCAAGAAAGGCCAAAAGGGTAGTGGTGCGGGTGTAAATGTTGAGCAGGAAAATGAACAAGTAGAAGAAAATGATGCAGTTAGTCAGTTTGAGCAAAATTTGCATAATACCAAACCAGGTTCTGGAAAAATCAGTCGTGGGCAACGAGGCAAACTTAGGAAAGTGAAGGAGAAGTACGCAGATCAAGATGAGGAAGAAAGAAGCATTAAAATGGCTTTACTGGCTGTGAGTATAATGATTTTCACTATCCTTTTATATTTATCTGGAGACATCTCCAGTGAAATATTGTTTGTATGGAACCTTTACATGGCAGGCTCTGATGATGCTCCAAAAATCTGCTACAAGTGTAAGAAGGCAGGTCACTTATCTCGGGATTGCCAAGAGCATCCTGATGAAAATTCAAATAGTCATTCCAATGAAGGAGTTGAAGGCCATCTTGGCTCAAGGGTAGATGATGCCGCTGAAATGGACAGAGTACCTATGGAGGAGGAGGATATTCATGAGATAGGCGACGAGGAGAAAGAGAAATTGAACGACGTGGATTACTTGACTGGGAATCCATTGCCCAGCGATATTCTGTTGTATGCCGTTCCAGTTTGTGGTCCTTACAGTGCCGTTCAATCTTATAAGTTCCATGTGAAGATCATTCCAGGCACAGCGAAAAGAGGAAAAGCTGCAAAAACAGCCATGAATTTGTTCAGCCACATGTCGGAAACAACAAGTAGAGAGAAGGAATTAATGAAAGCGTGTACAGATCCGGAGCTGGTTTCGGCCATCATTGGGAATGTGAAGATAACTTCGGCGGGTCTTACACAACTGAAGCAGAAGCAGAAGCAGGGAAAGAAAAGCAACAAAGCAGAAAACTGA 2973 41.27 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYMFKLMNSSGLTESGESEKVLLLIESGVRLHTTAYIRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGASAHYVILELYAQGNILLTDSDFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTSISKLQTALMSSQEPGAEENVPNSEDGNHILLSANENQGNHKSGKPSKLGKTQFDGGRAKQATLKIYDEFCPVLLNQFMSRENRVQTLKQEVDRCVKMAELIEYNLDDVDAAILAVRIAIAKGMSWGDLTRMVKEEKKSGNPVAGLIDKLYLERNCMTLLLSNNLDEMDDDEKTLPVEVDLSHNAHSNARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRLQLSQQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHRPEQPVPPLTLNQTGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGTHLNERRVRGEEEGMDEITESGTVIEESDSDSEKERDDINARMSNSTEGPSSNNNRTISDTKASNALTDKYVGNNMTLNISDEDNVPDIKYVSSPQLEDLIDRALELGSAATSSKIYGHQTSQVDNPEDQKATAREKPYISKAERRKLKKGQKGSGAGVNVEQENEQVEENDAVSQFEQNLHNTKPGSGKISRGQRGKLRKVKEKYADQDEEERSIKMALLAVSIMIFTILLYLSGDISSEILFVWNLYMAGSDDAPKICYKCKKAGHLSRDCQEHPDENSNSHSNEGVEGHLGSRVDDAAEMDRVPMEEEDIHEIGDEEKEKLNDVDYLTGNPLPSDILLYAVPVCGPYSAVQSYKFHVKIIPGTAKRGKAAKTAMNLFSHMSETTSREKELMKACTDPELVSAIIGNVKITSAGLTQLKQKQKQGKKSNKAEN 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48601879 48609582 + Bma022166.1 Bma05g01011 83095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01011 990 Gene3D - 809 861 - -
Bma05g01011 990 Pfam NFACT protein RNA binding domain 418 529 IPR008532 -
Bma05g01011 990 SMART c2hcfinal6 814 830 IPR001878 GO:0003676|GO:0008270
Bma05g01011 990 Pfam NFACT protein C-terminal domain 875 967 IPR021846 -
Bma05g01011 990 SUPERFAMILY Retrovirus zinc finger-like domains 809 832 IPR036875 GO:0003676|GO:0008270
Bma05g01011 990 MobiDBLite consensus disorder prediction 673 722 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 734 761 - -
Bma05g01011 990 Pfam Zinc knuckle 814 829 IPR001878 GO:0003676|GO:0008270
Bma05g01011 990 MobiDBLite consensus disorder prediction 582 597 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 181 226 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 198 219 - -
Bma05g01011 990 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 684 700 - -
Bma05g01011 990 ProSiteProfiles Zinc finger CCHC-type profile. 815 830 IPR001878 GO:0003676|GO:0008270
Bma05g01011 990 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 252 978 - -
Bma05g01011 990 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 198 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 826 852 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 598 617 - -
Bma05g01011 990 MobiDBLite consensus disorder prediction 560 617 - -
Bma05g01011 990 PANTHER - 3 198 - -
Bma05g01011 990 PANTHER - 252 978 - -
Bma05g01011 990 Pfam NFACT N-terminal and middle domains 10 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01011 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - csin:114313588 1306.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01489 Bma-Chr1:28774103 Bma05g01011 Bma-Chr5:48601879 8.25E-115 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01011 Bma_Chr05 FPKM 6.408805 7.285543 7.83481 7.415697 11.292636 11.767157 10.354712 5.27267 4.020712 3.214992