Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01012 ATGGCGTCCTTCACTCAGCAATTCACAGGGCTGAGATTTGCTTCTCCATTTTTGCCTCGCTTGTCCAAGCCTCTATCCAGGCCGACCACCCACCACAAGTCCAGGCTTTCTATTGTCTCCGCTGCTCCTTCTCCCATTTCCAATGCTCAGACCAGAGAGCGCCTCAAACTCAAGGAGCTGTTCGAGGAGGCTTACGAACGCTGTCGCACTGCTCCCACCGAAGGTGTCTCTTTCACTTTCGAAGACTTCAATGCCGCTCTTGATAAGTACGACTTCGAATCTGAAATTGGGATGAAGGTTAAAGGAACAGTGTTCTGTACCGATGCAAATGGGGCATTAGTTGACATCACTGCCAAGTCATCGGCATACTTACCTGTTCAAGAGGCTTGCATTCACAGAATAAGACACGTAAAGGAGGCAGGCATATATCCTGGTCTGAGAGAAGAATTTATAATCATTGGTGAAAATGAATATGATGATAGTCTAGTACTTAGCTTGAGATCCATCCAGTATGATCTTGCCTGGGAGCGATGTAGGCAACTTCAGGCTGAGGATATAGTTGTCAAGGGTAAGGTTGTTGGTGCAAACAAGGGTGGAGTAGTAGCGGTTGTGGAAGGTCTGAGAGGATTTGTTCCTTTCTCACAGATATCCACGAAATCAGCTGCGGAAGAGCTTCTTGAGAAGGAACTTCCTCTGAAATTTGTGGAGGTGGATGCAGAACAGTCAAGACTTGTCCTCAGTAACCGCAAAGCAATGGCTGATAGCCAGGCACAGCTAGGAATTGGATCAGTCGTCACTGGAACTGTTCAGAGCTTGAAACCTTATGGTGCCTTTATCGACATTGGTGGAATCAATGGTCTTCTTCACGTCAGTCAGATCAGTCATGATCGTGTCTCTGATATTGGTACAGTTTTTCAACCCGGCGATATTCTCAAGGTTATGATTCTGAGTCATGATCGTGAGAGAGGCCGAGTCAGTCTTTCTACCAAGAAGTTAGAACCTACTCCTGGAGACATGATTCGCAACCCAAAACTTGTTTTCGAGAAGGCAGAGGAGATGGCGCAGACGTTCAGACAAAGAATAGCTCAAGCCGAAGCAATGGCCCGGGCCGACATGCTTAGATTCCAGCCAGAGAGTGGATTAACCCTTAGCTCTGAGGGGATATTGGGTCCTCTAACATCGGACTTGCCCGTGGAGGGTTTGGATTTGAGCTATCTCCCCCCTGCTGATGAACCATAA 1239 47.54 MASFTQQFTGLRFASPFLPRLSKPLSRPTTHHKSRLSIVSAAPSPISNAQTRERLKLKELFEEAYERCRTAPTEGVSFTFEDFNAALDKYDFESEIGMKVKGTVFCTDANGALVDITAKSSAYLPVQEACIHRIRHVKEAGIYPGLREEFIIIGENEYDDSLVLSLRSIQYDLAWERCRQLQAEDIVVKGKVVGANKGGVVAVVEGLRGFVPFSQISTKSAAEELLEKELPLKFVEVDAEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIGTVFQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSEGILGPLTSDLPVEGLDLSYLPPADEP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48612023 48614971 + Bma022167.1 Bma05g01012 83096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01012 412 SUPERFAMILY Nucleic acid-binding proteins 261 340 IPR012340 -
Bma05g01012 412 SMART S1_6 260 330 IPR022967 -
Bma05g01012 412 SMART S1_6 183 249 IPR022967 -
Bma05g01012 412 SMART S1_6 95 167 IPR022967 -
Bma05g01012 412 CDD S1_RPS1_repeat_hs4 262 330 - -
Bma05g01012 412 PANTHER 30S RIBOSOMAL PROTEIN S1 1 411 - -
Bma05g01012 412 Gene3D - 256 334 IPR012340 -
Bma05g01012 412 SUPERFAMILY Nucleic acid-binding proteins 180 253 IPR012340 -
Bma05g01012 412 Coils Coil 347 367 - -
Bma05g01012 412 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 411 - -
Bma05g01012 412 CDD S1_RPS1_repeat_ec2_hs2 185 249 - -
Bma05g01012 412 ProSiteProfiles S1 domain profile. 262 330 IPR003029 GO:0003676
Bma05g01012 412 Pfam S1 RNA binding domain 261 330 IPR003029 GO:0003676
Bma05g01012 412 Pfam S1 RNA binding domain 184 247 IPR003029 GO:0003676
Bma05g01012 412 Gene3D - 180 255 IPR012340 -
Bma05g01012 412 Gene3D - 80 179 IPR012340 -
Bma05g01012 412 ProSiteProfiles S1 domain profile. 97 167 IPR003029 GO:0003676
Bma05g01012 412 SUPERFAMILY Nucleic acid-binding proteins 93 193 IPR012340 -
Bma05g01012 412 ProSiteProfiles S1 domain profile. 185 249 IPR003029 GO:0003676
Bma05g01012 412 PRINTS Ribosomal protein S1 signature 115 129 IPR035104 -
Bma05g01012 412 PRINTS Ribosomal protein S1 signature 206 223 IPR035104 -
Bma05g01012 412 PRINTS Ribosomal protein S1 signature 97 115 IPR035104 -
Bma05g01012 412 PRINTS Ribosomal protein S1 signature 188 204 IPR035104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01012 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - csv:101222582 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01427 Bma-Chr1:24232724 Bma05g01012 Bma-Chr5:48612023 7.36E-22 dispersed
Bma04g00510 Bma-Chr4:4491383 Bma05g01012 Bma-Chr5:48612023 2.70E-09 dispersed
Bma04g00723 Bma-Chr4:7470703 Bma05g01012 Bma-Chr5:48612023 8.79E-35 dispersed
Bma05g01012 Bma-Chr5:48612023 Bma06g01406 Bma-Chr6:50830557 3.76E-21 dispersed
Bma05g01012 Bma-Chr5:48612023 Bma02g00151 Bma-Chr2:1328411 1.28E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01012 Bma_Chr05 FPKM 64.291664 71.019272 52.546707 55.673431 56.605366 43.84153 54.987072 19.150724 18.187084 19.701002