Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01017 ATGGATGGTAGGGTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCAAACATTGAAAGATTTGGATATGAGAAACATTATGGATGAAGCAAAAATGAGATGGCTCCGGCCCAATGAAATTCATGCCATACTTTGTAATCACAGATACTTCAACATCAATGTCAAACCATTGAACTTGCCCCCGGGTGGTACTATAAAGTTATTTGATCGTAAGATGCTTAGGAACTTTAGGAAGGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACAGTCAAAGAAGCACATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGACAGGATGCTCCAACCTTTGTCCGCCGGTGCTATTGGCTTCTTGATAAGAGTCTAGAACACATAGTTCTTGTTCATTACCGTGAAACACAAGAGGTACATTTGCAGGGTTCTCCAGCCACCCCTGTGAATTCTAATTCTAGTTCTGTCTCCGACCATTCTGCCCCCTGGCGTTTATCAGAGAAACTTGATTCTGGGACTGACCAAGCTCCTCAAGTTGGTGAAAATGAATTTCTAGAGCCTCATAATAATTTAACTGTGAAGAATTATGAGCAAAGACTTCATGAGATTAACTCGCTTGAATGGGATGAGCTTCTTGTAACAGATGATATTTCCAATACACCTAAAGGAGATGGCAAAGTCTGTTTTGACCAAAAGAATCAAATTGCAGTGAATGAATCCACAATTGGAGAAGGCAAGAATTTATTGGTGGAACTTTCTACATTTGACGATACAAGTGGGAGATATAACCCAAGTTATTTGGGTTCACCAAACAGCACCTACATATCTACAGCGGTTAGTCAATTGAATTCAAATGCACAGAAAGGGAGTTTCATTGCAATGGCCTCTAATGATTCTTCGGGTATTGGGGTCCACGTGGGTTTGCGAAGTCAGGATAGTTTTGGGCAGTGGATAAATGACATTATCTCTGACTCTTCTGGTTCAGCAGATGATTCAGCTTTTGAGTCTTCCATTTTACCTCACGAGGAATTTACCTCTGCTATAGATCATCATCAATCTTCTATTCCAGAACAAATTTTTGACATAACTGATATCTCTCCTGGATGGGCATTTACGACAGAAAGAACCAAGATTTTGATAACTGGATTCTTTCATGACGAGTATGCTCATCTGGCTAAATCCAGTTTGTTTTGTGTCTGTGGCGATGTTTGTATTCCTACAGAAGTTGTTCAAGTTGGAGTATATCGGTGCCTGGTACCACCACATCCACCTGGCTTTGTAAATCTCTATCTCAGTTTAGATGGTCAAAAACCAATCAGCCAAGTTCTGAATTTTGAGTATCACAGCAAATTACTGGATGGTTCAGGAGTTTCTTTAGAAGAAAAAGACAGATGGAAGGAATTCCAAGTACAGATGAGGCTTCTTTGCTCGCTTTTTTCTACATCTAAGAGCCTGAGCATTCTATCTAGTAAAGCATCACCAACCGCACTGCAGTTAGCGAAGAACTTTGCTCAAAAAACCTCTAACATTGCCAATAGTTGGGCTTATTTGCACAAGTCAGTTCAAGAAAATAAAATTTCATTTCCATCTGCGAAAGATGGATTATTGGAAGTAATTTTAAAGAATAGAGTAAGGGAATGGCTATTAGAAAGAATTGTTGAAGGGTCCAAGAAGAGCACGGACTTTGATGCCCAAGGTCAAGGAGTAATTCACTTATGTGCCATTCTGGGATATTCATGGGCTATACAGTTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATTGCGGCAGGGAGAAAATGGTTGCAGTGCTTCTATATGCTGGAGCAAAGCCGAACTTGGTCACAGACCCAACCCCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATTTTTCAAGGGTCATGACGGCTTGGCTGCCTATCTATCAGAAAAGGCTTTAATATCACATTTTCAGGAAATGAGTATAGCTGGGAATATCAGTGGTACACTGCGAACCAGCACAACTGAGAAGGAGAGTGCAAACTCTGAGAACCTCCGAGAGGAGCAGCTATATATGAAAGATAGTCTGGCAGCTTACACAACAGCTGCCGATGCAGCAGCACGTATACAGGCTGCGTTTCATGAACATTCTTTCAGGCAAAGATCTAAAGATGTTCGAATTTCAAATCCAGAGATTGAAGCCCGCAATATTATTGCAGCAATGAAAATTCAGCATGCATTCCGTAATTATGAAATGCGACGGAAAATGGCAGCTGCTGCTCATATACAACACAGATTCCGTACTTGGAAATTGCATAAAGATTTCCTTAACATGCGACGTCAAGCTATCAAAATTCAAGCTGCATTCCGAGGTTTTCAAGTGCGGAGGCAATACATTAAAATTATTTGGTCGGTAGGAATTCTCGAGAAAGCTATACTACGATGGCGGTTGAAGAGAAAAGGCCTTCGTGGACTTCAAGTTGAACCCATCGAATCACTTGCCGAGCAGAGACAGGAAAGTGATACGGAGGAGGATTTTTATCGCACGAGCCAGAAACTAGCTAGTGAACGTGTTGAGAGATCCGTCATACGAGTTCAGGCCTTGTTTCGTTCAAAGAAAGCACAAGAAGATTACCAGAGGATGAAGATCGCCCATCTGGAAGCGAAGCTGGAATATGATGGAATTTTCGATCCTGAAATTGATATGCATTCTTGA 2769 41.24 MDGRVQGMLVGSEIHGFQTLKDLDMRNIMDEAKMRWLRPNEIHAILCNHRYFNINVKPLNLPPGGTIKLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDAPTFVRRCYWLLDKSLEHIVLVHYRETQEVHLQGSPATPVNSNSSSVSDHSAPWRLSEKLDSGTDQAPQVGENEFLEPHNNLTVKNYEQRLHEINSLEWDELLVTDDISNTPKGDGKVCFDQKNQIAVNESTIGEGKNLLVELSTFDDTSGRYNPSYLGSPNSTYISTAVSQLNSNAQKGSFIAMASNDSSGIGVHVGLRSQDSFGQWINDIISDSSGSADDSAFESSILPHEEFTSAIDHHQSSIPEQIFDITDISPGWAFTTERTKILITGFFHDEYAHLAKSSLFCVCGDVCIPTEVVQVGVYRCLVPPHPPGFVNLYLSLDGQKPISQVLNFEYHSKLLDGSGVSLEEKDRWKEFQVQMRLLCSLFSTSKSLSILSSKASPTALQLAKNFAQKTSNIANSWAYLHKSVQENKISFPSAKDGLLEVILKNRVREWLLERIVEGSKKSTDFDAQGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKFGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTPENPGGCTAADLAFFKGHDGLAAYLSEKALISHFQEMSIAGNISGTLRTSTTEKESANSENLREEQLYMKDSLAAYTTAADAAARIQAAFHEHSFRQRSKDVRISNPEIEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKLHKDFLNMRRQAIKIQAAFRGFQVRRQYIKIIWSVGILEKAILRWRLKRKGLRGLQVEPIESLAEQRQESDTEEDFYRTSQKLASERVERSVIRVQALFRSKKAQEDYQRMKIAHLEAKLEYDGIFDPEIDMHS 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48659681 48678083 - Bma022173.1 Bma05g01017 83101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01017 922 MobiDBLite consensus disorder prediction 151 171 - -
Bma05g01017 922 SMART ANK_2a 607 636 IPR002110 GO:0005515
Bma05g01017 922 SMART ANK_2a 646 675 IPR002110 GO:0005515
Bma05g01017 922 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Bma05g01017 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Bma05g01017 922 Gene3D - 772 820 - -
Bma05g01017 922 SUPERFAMILY E set domains 371 456 IPR014756 -
Bma05g01017 922 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Bma05g01017 922 ProSiteProfiles IQ motif profile. 757 783 IPR000048 GO:0005515
Bma05g01017 922 Pfam IPT/TIG domain 371 456 IPR002909 -
Bma05g01017 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 916 - -
Bma05g01017 922 SMART iq_5 875 897 IPR000048 GO:0005515
Bma05g01017 922 SMART iq_5 753 775 IPR000048 GO:0005515
Bma05g01017 922 SMART iq_5 795 817 IPR000048 GO:0005515
Bma05g01017 922 SUPERFAMILY Ankyrin repeat 571 669 IPR036770 -
Bma05g01017 922 ProSiteProfiles IQ motif profile. 796 820 IPR000048 GO:0005515
Bma05g01017 922 ProSiteProfiles IQ motif profile. 877 905 IPR000048 GO:0005515
Bma05g01017 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Bma05g01017 922 Gene3D Immunoglobulins 364 460 IPR013783 -
Bma05g01017 922 MobiDBLite consensus disorder prediction 151 170 - -
Bma05g01017 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Bma05g01017 922 Gene3D - 487 672 IPR036770 -
Bma05g01017 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 916 - -
Bma05g01017 922 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Bma05g01017 922 Pfam Ankyrin repeats (3 copies) 555 636 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01136 Bma05g01017 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01017 Bma-Chr5:48659681 Bma08g00419 Bma-Chr8:13769590 1.87E-35 dispersed
Bma04g01136 Bma-Chr4:28303415 Bma05g01017 Bma-Chr5:48659681 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57354 PF03859 CG-1 3.10E-44 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01017 K21596 - jre:108994781 1166.37