Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01017 ATGGATGGTAGGGTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCAAACATTGAAAGATTTGGATATGAGAAACATTATGGATGAAGCAAAAATGAGATGGCTCCGGCCCAATGAAATTCATGCCATACTTTGTAATCACAGATACTTCAACATCAATGTCAAACCATTGAACTTGCCCCCGGGTGGTACTATAAAGTTATTTGATCGTAAGATGCTTAGGAACTTTAGGAAGGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACAGTCAAAGAAGCACATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGACAGGATGCTCCAACCTTTGTCCGCCGGTGCTATTGGCTTCTTGATAAGAGTCTAGAACACATAGTTCTTGTTCATTACCGTGAAACACAAGAGGTACATTTGCAGGGTTCTCCAGCCACCCCTGTGAATTCTAATTCTAGTTCTGTCTCCGACCATTCTGCCCCCTGGCGTTTATCAGAGAAACTTGATTCTGGGACTGACCAAGCTCCTCAAGTTGGTGAAAATGAATTTCTAGAGCCTCATAATAATTTAACTGTGAAGAATTATGAGCAAAGACTTCATGAGATTAACTCGCTTGAATGGGATGAGCTTCTTGTAACAGATGATATTTCCAATACACCTAAAGGAGATGGCAAAGTCTGTTTTGACCAAAAGAATCAAATTGCAGTGAATGAATCCACAATTGGAGAAGGCAAGAATTTATTGGTGGAACTTTCTACATTTGACGATACAAGTGGGAGATATAACCCAAGTTATTTGGGTTCACCAAACAGCACCTACATATCTACAGCGGTTAGTCAATTGAATTCAAATGCACAGAAAGGGAGTTTCATTGCAATGGCCTCTAATGATTCTTCGGGTATTGGGGTCCACGTGGGTTTGCGAAGTCAGGATAGTTTTGGGCAGTGGATAAATGACATTATCTCTGACTCTTCTGGTTCAGCAGATGATTCAGCTTTTGAGTCTTCCATTTTACCTCACGAGGAATTTACCTCTGCTATAGATCATCATCAATCTTCTATTCCAGAACAAATTTTTGACATAACTGATATCTCTCCTGGATGGGCATTTACGACAGAAAGAACCAAGATTTTGATAACTGGATTCTTTCATGACGAGTATGCTCATCTGGCTAAATCCAGTTTGTTTTGTGTCTGTGGCGATGTTTGTATTCCTACAGAAGTTGTTCAAGTTGGAGTATATCGGTGCCTGGTACCACCACATCCACCTGGCTTTGTAAATCTCTATCTCAGTTTAGATGGTCAAAAACCAATCAGCCAAGTTCTGAATTTTGAGTATCACAGCAAATTACTGGATGGTTCAGGAGTTTCTTTAGAAGAAAAAGACAGATGGAAGGAATTCCAAGTACAGATGAGGCTTCTTTGCTCGCTTTTTTCTACATCTAAGAGCCTGAGCATTCTATCTAGTAAAGCATCACCAACCGCACTGCAGTTAGCGAAGAACTTTGCTCAAAAAACCTCTAACATTGCCAATAGTTGGGCTTATTTGCACAAGTCAGTTCAAGAAAATAAAATTTCATTTCCATCTGCGAAAGATGGATTATTGGAAGTAATTTTAAAGAATAGAGTAAGGGAATGGCTATTAGAAAGAATTGTTGAAGGGTCCAAGAAGAGCACGGACTTTGATGCCCAAGGTCAAGGAGTAATTCACTTATGTGCCATTCTGGGATATTCATGGGCTATACAGTTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATTGCGGCAGGGAGAAAATGGTTGCAGTGCTTCTATATGCTGGAGCAAAGCCGAACTTGGTCACAGACCCAACCCCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATTTTTCAAGGGTCATGACGGCTTGGCTGCCTATCTATCAGAAAAGGCTTTAATATCACATTTTCAGGAAATGAGTATAGCTGGGAATATCAGTGGTACACTGCGAACCAGCACAACTGAGAAGGAGAGTGCAAACTCTGAGAACCTCCGAGAGGAGCAGCTATATATGAAAGATAGTCTGGCAGCTTACACAACAGCTGCCGATGCAGCAGCACGTATACAGGCTGCGTTTCATGAACATTCTTTCAGGCAAAGATCTAAAGATGTTCGAATTTCAAATCCAGAGATTGAAGCCCGCAATATTATTGCAGCAATGAAAATTCAGCATGCATTCCGTAATTATGAAATGCGACGGAAAATGGCAGCTGCTGCTCATATACAACACAGATTCCGTACTTGGAAATTGCATAAAGATTTCCTTAACATGCGACGTCAAGCTATCAAAATTCAAGCTGCATTCCGAGGTTTTCAAGTGCGGAGGCAATACATTAAAATTATTTGGTCGGTAGGAATTCTCGAGAAAGCTATACTACGATGGCGGTTGAAGAGAAAAGGCCTTCGTGGACTTCAAGTTGAACCCATCGAATCACTTGCCGAGCAGAGACAGGAAAGTGATACGGAGGAGGATTTTTATCGCACGAGCCAGAAACTAGCTAGTGAACGTGTTGAGAGATCCGTCATACGAGTTCAGGCCTTGTTTCGTTCAAAGAAAGCACAAGAAGATTACCAGAGGATGAAGATCGCCCATCTGGAAGCGAAGCTGGAATATGATGGAATTTTCGATCCTGAAATTGATATGCATTCTTGA 2769 41.24 MDGRVQGMLVGSEIHGFQTLKDLDMRNIMDEAKMRWLRPNEIHAILCNHRYFNINVKPLNLPPGGTIKLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDAPTFVRRCYWLLDKSLEHIVLVHYRETQEVHLQGSPATPVNSNSSSVSDHSAPWRLSEKLDSGTDQAPQVGENEFLEPHNNLTVKNYEQRLHEINSLEWDELLVTDDISNTPKGDGKVCFDQKNQIAVNESTIGEGKNLLVELSTFDDTSGRYNPSYLGSPNSTYISTAVSQLNSNAQKGSFIAMASNDSSGIGVHVGLRSQDSFGQWINDIISDSSGSADDSAFESSILPHEEFTSAIDHHQSSIPEQIFDITDISPGWAFTTERTKILITGFFHDEYAHLAKSSLFCVCGDVCIPTEVVQVGVYRCLVPPHPPGFVNLYLSLDGQKPISQVLNFEYHSKLLDGSGVSLEEKDRWKEFQVQMRLLCSLFSTSKSLSILSSKASPTALQLAKNFAQKTSNIANSWAYLHKSVQENKISFPSAKDGLLEVILKNRVREWLLERIVEGSKKSTDFDAQGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKFGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTPENPGGCTAADLAFFKGHDGLAAYLSEKALISHFQEMSIAGNISGTLRTSTTEKESANSENLREEQLYMKDSLAAYTTAADAAARIQAAFHEHSFRQRSKDVRISNPEIEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKLHKDFLNMRRQAIKIQAAFRGFQVRRQYIKIIWSVGILEKAILRWRLKRKGLRGLQVEPIESLAEQRQESDTEEDFYRTSQKLASERVERSVIRVQALFRSKKAQEDYQRMKIAHLEAKLEYDGIFDPEIDMHS 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48659681 48678083 - Bma022173.1 Bma05g01017 83101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01017 922 MobiDBLite consensus disorder prediction 151 171 - -
Bma05g01017 922 SMART ANK_2a 607 636 IPR002110 GO:0005515
Bma05g01017 922 SMART ANK_2a 646 675 IPR002110 GO:0005515
Bma05g01017 922 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Bma05g01017 922 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Bma05g01017 922 Gene3D - 772 820 - -
Bma05g01017 922 SUPERFAMILY E set domains 371 456 IPR014756 -
Bma05g01017 922 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Bma05g01017 922 ProSiteProfiles IQ motif profile. 757 783 IPR000048 GO:0005515
Bma05g01017 922 Pfam IPT/TIG domain 371 456 IPR002909 -
Bma05g01017 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 916 - -
Bma05g01017 922 SMART iq_5 875 897 IPR000048 GO:0005515
Bma05g01017 922 SMART iq_5 753 775 IPR000048 GO:0005515
Bma05g01017 922 SMART iq_5 795 817 IPR000048 GO:0005515
Bma05g01017 922 SUPERFAMILY Ankyrin repeat 571 669 IPR036770 -
Bma05g01017 922 ProSiteProfiles IQ motif profile. 796 820 IPR000048 GO:0005515
Bma05g01017 922 ProSiteProfiles IQ motif profile. 877 905 IPR000048 GO:0005515
Bma05g01017 922 SMART CG_1_2 28 146 IPR005559 GO:0003677
Bma05g01017 922 Gene3D Immunoglobulins 364 460 IPR013783 -
Bma05g01017 922 MobiDBLite consensus disorder prediction 151 170 - -
Bma05g01017 922 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Bma05g01017 922 Gene3D - 487 672 IPR036770 -
Bma05g01017 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 916 - -
Bma05g01017 922 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Bma05g01017 922 Pfam Ankyrin repeats (3 copies) 555 636 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01017 K21596 CAMTA; calmodulin-binding transcription activator - jre:108994781 1166.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01136 Bma05g01017 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01017 Bma-Chr5:48659681 Bma08g00419 Bma-Chr8:13769590 1.87E-35 dispersed
Bma04g01136 Bma-Chr4:28303415 Bma05g01017 Bma-Chr5:48659681 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57354 PF03859 CG-1 3.10E-44 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01017 Bma_Chr05 FPKM 12.033355 13.569503 0.0 0.0 1.029389 0.675011 0.966465 0.076162 0.085309 0.0