Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01022 ATGAATCTGAATCACGGCAAGGCATCGATGCCTACAGCTATTTGTAGTGCTGCTCTTAAATCCGGCGAAGTTGTTTCCGAACAATTTCCGGCTGGTCTACGAGTTCTGGTCGTCGATGACGATCCGACCTGCCTGAGAATCTTGGATAAGATGCTTCAATTTTGTCTCTACCACGTTACTACGTGCAATCGAGCCGAGACTGCGTTGTCTAAGCTTCGAGATAACAAAAATGGATTCGATATCGTAATTAGTGATGTCCATATGCCGGACATGGATGGATTTAAGCTCTTAGAGCACATTGGCCTAGAAATGGACTTACCAGTTATCATGATGTCGGCCGATGAAAGCAAAGATGTTGTCATGAAGGGAGTTACTCACGGAGCTTGCGATTATTTAATAAAACCTGTTCGAATTGAAGCTTTGAAGAACATATGGCAACATGTGGTCCGGAGGAGGAAGAATGAGTGGAAGGATCTAGAACAATCCGGAAGTGTCGAAGACGGGGATCGGCAACCAAAACCGTGCGATGACGCGGATTACTCGTCCTCGTTAAATGATGGAAATTGCAAAAGCTCGAAGAGGAGGAAAGACGATGAAGAAGAAGCTGAGGAACGAGATGATTCGTCGACGTTGAAGAAGCCACGCGTGGTTTGGTCGGTCGATCTTCATCAGCAGTTCGTTGCAGCTGTTAATCAACTCGGCATTGACAAGGCTGTTCCTAAGAAAATTTTGGAGCTGATGAATGTTTCGGGACTCACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGGTTGTATCTAAGAAGGCTAAGCGGAGTTGCACAACACCCTAGTAATTTGAACAATTCCTTCATCAACCCACGAGAAGCAATATTCGGGCCAGTTTCAGCATTCAACGAGATGAATCTTCAGGCTCTTGCCGTGACCGGAAAACTCACACTCCAAAGTCTTGCCTCGCTTCAAGCTGCCGGCCTGAGTAGATCTTCTTCAGCAAAATCCGGCGTAATTTCCGATCAGAGGAACATATTTAGCTTTGAGAATCCCAAACTGAGATTTGGTGAGGCCCAGCCTCAGCATCTCAACAGTAGTAAACCAATAAATTTATTGCATGGAATTCCCTCCCCCATGGAAGAAAAGCAGCTTGCAAATTTGAACCATGGAAGCATAAATATGCAAGGTAATATCCATGGAGGCCAAAACAACTCTTTATTAACCCAGATGACTCAACCTCAATCATCAATCAGACAGTCTGTTAGAATTCCAGGTGGGGTTCCGACGAACAATCTGATTCCGCCGGAGTCGTCTATCTTCAGTTTTCCGGCGAACCAAACAGCTGAATTCTCGCGAAATAATTTTCCTCTTCAAACAGCTCCATCTAAAGAGCCATTCTTGGAAGAATCAAATCTAGGAACAAAACAATCAGGAAGATTTGTATCAAATTATGATATATTCGATGATTTGCAGAATCCCAGTTTGAACTTCAATGCCTCTCAAGGCAACCTGAATATCTCATCTTCGGGTTTATATCATCAAAGCTTTCCCTCCAGCCAAAGGATCAGACAAGAAAGCGATGTTTCTACAACTCGACCTGAGAACGGACAGATCATCGGACAGCAACTAAATTCTGTTATTTTTGACAATCCGGTGAGGGTTAAAGCCGAGACAATCCCAGATCCAAGCTGCGTCTTATTCCCTGAAAACTTCGTTCGGGACGATCTAATGAGTACCCTTTTCAGACAAGTTTGTTTCCTACAACTTTTCTTCTCTGTTTGTTTTCGATTAAATTGTCTCAAATTTGCTGCTTTTTTTTTTCTCCAGCAACAAGAGAATTTCGGGCTGGGATCGACTGAAAGCGACTACGATTTCGACAGGTATTCGATGGATAACATTCCCGTTTGA 1902 43.59 MNLNHGKASMPTAICSAALKSGEVVSEQFPAGLRVLVVDDDPTCLRILDKMLQFCLYHVTTCNRAETALSKLRDNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADESKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNEWKDLEQSGSVEDGDRQPKPCDDADYSSSLNDGNCKSSKRRKDDEEEAEERDDSSTLKKPRVVWSVDLHQQFVAAVNQLGIDKAVPKKILELMNVSGLTRENVASHLQKYRLYLRRLSGVAQHPSNLNNSFINPREAIFGPVSAFNEMNLQALAVTGKLTLQSLASLQAAGLSRSSSAKSGVISDQRNIFSFENPKLRFGEAQPQHLNSSKPINLLHGIPSPMEEKQLANLNHGSINMQGNIHGGQNNSLLTQMTQPQSSIRQSVRIPGGVPTNNLIPPESSIFSFPANQTAEFSRNNFPLQTAPSKEPFLEESNLGTKQSGRFVSNYDIFDDLQNPSLNFNASQGNLNISSSGLYHQSFPSSQRIRQESDVSTTRPENGQIIGQQLNSVIFDNPVRVKAETIPDPSCVLFPENFVRDDLMSTLFRQVCFLQLFFSVCFRLNCLKFAAFFFLQQQENFGLGSTESDYDFDRYSMDNIPV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48731842 48734587 - Bma022178.1 Bma05g01022 83106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01022 633 CDD REC_typeB_ARR-like 35 149 - -
Bma05g01022 633 MobiDBLite consensus disorder prediction 189 210 - -
Bma05g01022 633 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Bma05g01022 633 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 IPR045279 GO:0009736
Bma05g01022 633 PANTHER TWO-COMPONENT RESPONSE REGULATOR 426 568 IPR045279 GO:0009736
Bma05g01022 633 PANTHER TWO-COMPONENT RESPONSE REGULATOR 426 568 - -
Bma05g01022 633 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 413 - -
Bma05g01022 633 SUPERFAMILY CheY-like 32 156 IPR011006 -
Bma05g01022 633 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Bma05g01022 633 Gene3D - 210 272 - -
Bma05g01022 633 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Bma05g01022 633 MobiDBLite consensus disorder prediction 156 210 - -
Bma05g01022 633 SMART REC_2 33 145 IPR001789 GO:0000160
Bma05g01022 633 Gene3D - 33 166 - -
Bma05g01022 633 MobiDBLite consensus disorder prediction 156 176 - -
Bma05g01022 633 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Bma05g01022 633 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Bma05g01022 633 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g01022 Bma06g01483 CCT
Bma05g01022 Bma06g01483 ECH
Bma04g01144 Bma05g01022 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01022 Bma-Chr5:48731842 Bma07g00742 Bma-Chr7:20021750 4.85E-110 dispersed
Bma14g02067 Bma-Chr14:44031721 Bma05g01022 Bma-Chr5:48731842 4.63E-34 transposed
Bma04g01144 Bma-Chr4:28858431 Bma05g01022 Bma-Chr5:48731842 0 wgd
Bma05g01022 Bma-Chr5:48731842 Bma06g01483 Bma-Chr6:51407722 2.73E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57355 PF00072 Response_reg 1.30E-22 CL0304 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01022 - K14491 qsu:112028482 714.916