Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01024 ATGCCTTGGCATGATGTGCATTGTGCCCTATGGGGACCACCATGCCGTGATGTAGCTAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCCAATGAGCAAGCAATTCCACTACTTATGCCTCAGCACCACATGGTTATTCCACATTACTTGGGACAGAGTAGAGAGTTGGAAGATGAACAGGAGAATTTAAACGCGTCGAAAGACAATAAAAAATTGGATTCTTTTTCGTCTCGTTCCTCATTTCAAGATATTCCACTGCTTTTGCCGCAAGAGGCTGATGGACTAGGTTCTGAAATTAAAGACTCAAAGTCTACAGGGGAAGATTCTGCTTCTAATTTTCATAGTCAGGCCAACAAGGCTAATGGTAGTCTTCCTTTTTCTTTCCGGAAGTCTAAAGGTGATCAACTTGGTACGGCTTTGCCAATGAAAGGCTTTGTTGATGATTTTGACACTTCAGATTGTCATGGGAAAACGTTGGGAGAGGGAGTAACACAAAATGGCATAAGAAATTCAAATCCGGAGTGGTGGGAAACACAAGAGAGGGGAGATCAAGGTGGTTTGATGAATGAATGTGGACAAGTTGGTCCTCGTTCCTCGTGTCGCTGTCAGGTTATTAGAAGTGTCAGTCAATGGTCTGCTGGAACAAGCCAAACTGAAGAGAGCATTCACATTGCTTATTGTTCTCTTATAGAAAAAGCTGAACATTTTATTTATATCGAGAATCAATTTTTCATATCAGGTCTTTCAGGGGATGAGATAATCCGCAACCGTGTATTAGAAGCACTTTATCGTCGAATTATGAGAGCTTACAGTGATAAGAAGATTTTTAGGGTTATTATTATTATACCACTTTTACCAGGTTTCCAGGGGGGTCTGGATGATAGCGGTGCAGCATCAGTGAGAGCCATAATGCATTGGCAGTACCGAACAATATGTAGAGGAAATAGTTCGATACTGCATAATTTGTATGATCTTCTTGGTTCTAAAGCCCATGATTACATTTCATTCTATGGTGTCAGAGCCTATGGCAGACTTTATGATGGTGGTCCAGTGGCCTCAAGTCAGGTTTACGTTCATAGCAAAATCCTCATTGTTGACGATTCCACTGCATTGATTGGATCTGCTAACATTAATGATAGGAGTTTACTTGGTTCGAGGGATTCTGAGATTTGTATCGTCATCGAAGACAAAGAGCTAGTTACTTCTCAAATGGGAGGACAACCGTGGCAAGCTGGAAGATTTTGTTTGAGTCTTCGGCTGTCGCTATGGGCGGAGCACCTTGGTCTTCGTCCCGGACAGATTAATCAAATTGTGGACCCTATTGCTGATTCAACGTACAAGGACATTTGGATGGCAACTGCTAAGACAAATACCACAATCTACCAAGATGTGTTTTCTTGTATACCAAATGACCTTGTCCATTCCAGAGCGGCCCTACGACAAAGCATGGCATCTTGGAAAGAGAAACTGGATCACACTACGATAGACTTGGGAATTGCACCAGAGAAACTAGAGTACTTCCAGAATGGAGATATAAAGAAGATCGATCCAATTGAGAGACTGGAAACAGTGAAAGGGCATCTCGTTTCTTTCCCTTTGGAGTTCATGTGCCAAGAAGACCTGAGACCTGTTTTCAATGAGAGTGAGTATTATGCTTCCCAAGTCTTCCATTAA 1689 42.16 MPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLGQSRELEDEQENLNASKDNKKLDSFSSRSSFQDIPLLLPQEADGLGSEIKDSKSTGEDSASNFHSQANKANGSLPFSFRKSKGDQLGTALPMKGFVDDFDTSDCHGKTLGEGVTQNGIRNSNPEWWETQERGDQGGLMNECGQVGPRSSCRCQVIRSVSQWSAGTSQTEESIHIAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLEALYRRIMRAYSDKKIFRVIIIIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGNSSILHNLYDLLGSKAHDYISFYGVRAYGRLYDGGPVASSQVYVHSKILIVDDSTALIGSANINDRSLLGSRDSEICIVIEDKELVTSQMGGQPWQAGRFCLSLRLSLWAEHLGLRPGQINQIVDPIADSTYKDIWMATAKTNTTIYQDVFSCIPNDLVHSRAALRQSMASWKEKLDHTTIDLGIAPEKLEYFQNGDIKKIDPIERLETVKGHLVSFPLEFMCQEDLRPVFNESEYYASQVFH 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48786210 48791922 - Bma022182.1 Bma05g01024 83108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01024 562 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 386 IPR001736 GO:0003824
Bma05g01024 562 SUPERFAMILY Phospholipase D/nuclease 200 407 - -
Bma05g01024 562 PANTHER PHOSPHOLIPASE D 1 559 IPR015679 -
Bma05g01024 562 PANTHER PHOSPHOLIPASE 1 559 - -
Bma05g01024 562 SMART pld_4 359 386 IPR001736 GO:0003824
Bma05g01024 562 CDD PLDc_vPLD1_2_yPLD_like_2 219 403 - -
Bma05g01024 562 MobiDBLite consensus disorder prediction 63 79 - -
Bma05g01024 562 Gene3D Endonuclease Chain A 1 49 - -
Bma05g01024 562 MobiDBLite consensus disorder prediction 113 130 - -
Bma05g01024 562 Pfam PLD-like domain 233 406 IPR025202 -
Bma05g01024 562 MobiDBLite consensus disorder prediction 101 131 - -
Bma05g01024 562 PIRSF PLD_euk 1 73 IPR016555 GO:0004630|GO:0006654|GO:0048017
Bma05g01024 562 PIRSF PLD_euk 53 562 IPR016555 GO:0004630|GO:0006654|GO:0048017
Bma05g01024 562 MobiDBLite consensus disorder prediction 63 82 - -
Bma05g01024 562 Coils Coil 58 78 - -
Bma05g01024 562 Gene3D Endonuclease Chain A 183 415 - -
Bma05g01024 562 SUPERFAMILY Phospholipase D/nuclease 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01024 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - qsu:112006006 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01024 Bma-Chr5:48786210 Bma14g01317 Bma-Chr14:24301806 0 dispersed
Bma05g01024 Bma-Chr5:48786210 Bma09g00903 Bma-Chr9:48415787 2.87E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g143 Blo01g00072 . . Bda08g00300 . . . Bma05g01024 Cmo08g01217 Cmo17g00333 . . . . . . . . . . . . . . Cla06g00458 Cam06g0488 Cec06g0492 Cco06g0491 Clacu06g0475 Cmu06g0476 Cre06g1249 Cone14ag0747 . . . . Csa06g01777 Chy11g01535 . . . . . Bpe05g00825 . . . Sed09g0264 . . Cma08g01245 Cma17g00346 Car08g01119 Car17g00315 Cpe12g00294 Cpe17g00040 Bhi12g02031 Tan06g2709 Cmetu11g1217 Lac11g0888 . . Lcy12g0767 . . . . . . . Lsi09g01456 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.5 0.0e+00 1396.7
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT3G15730 71.6 0.0e+00 1202.2
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.5 8.4e-311 1062.8
Bma15g00411 . 1 254 Phospholipase D Gene Family (Wang group) AT3G15730 69.8 2.5e-113 406.8
Bma09g00903 CCT,ECH 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 78.6 0.0e+00 1374.8
Bma10g00806 CCT,ECH 12 775 Phospholipase D Gene Family (Wang group) AT1G52570 72.2 0.0e+00 1218.0
Bma07g00594 . 19 802 Phospholipase D Gene Family (Wang group) AT1G52570 62.6 1.9e-307 1051.6
Bma15g00411 . 1 252 Phospholipase D Gene Family (Wang group) AT1G52570 69.5 2.8e-112 403.3
Bma09g00903 CCT,ECH 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.4 6.8e-291 996.5
Bma10g00806 CCT,ECH 40 775 Phospholipase D Gene Family (Wang group) AT5G25370 59.7 2.1e-271 931.8
Bma07g00594 . 38 802 Phospholipase D Gene Family (Wang group) AT5G25370 58.4 7.3e-269 923.3
Bma15g00411 . 73 251 Phospholipase D Gene Family (Wang group) AT5G25370 50.5 2.3e-57 220.7
Bma15g00335 . 1 690 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 7.1e-240 827.0
Bma05g01121 . 65 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.7 0.0e+00 1421.0
Bma12g00109 . 15 916 Phospholipase D Gene Family (Wang group) AT2G42010 64.1 0.0e+00 1195.3
Bma05g00190 . 9 864 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.2e-262 903.3
Bma05g00178 . 12 843 Phospholipase D Gene Family (Wang group) AT2G42010 50.2 1.0e-250 863.6
Bma05g01121 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.4 0.0e+00 1251.9
Bma12g00109 . 81 916 Phospholipase D Gene Family (Wang group) AT4G00240 64.2 0.0e+00 1085.5
Bma05g00190 . 61 864 Phospholipase D Gene Family (Wang group) AT4G00240 54.5 1.5e-256 882.5
Bma05g00178 . 64 843 Phospholipase D Gene Family (Wang group) AT4G00240 52.9 3.1e-246 848.2
Bma05g01121 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 68.4 0.0e+00 1198.7
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11850 63.2 0.0e+00 1177.9
Bma05g01121 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 9.1e-244 839.7
Bma12g00109 . 13 700 Phospholipase D Gene Family (Wang group) AT4G11830 58.9 9.1e-236 813.1
Bma05g01121 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 65.3 0.0e+00 1138.6
Bma12g00109 . 3 916 Phospholipase D Gene Family (Wang group) AT4G11840 59.9 0.0e+00 1103.6
Bma05g00190 . 1 692 Phospholipase D Gene Family (Wang group) AT4G35790 63.3 6.0e-273 936.8
Bma05g00178 . 4 671 Phospholipase D Gene Family (Wang group) AT4G35790 58.9 6.2e-246 847.0
Bma14g01317 . 19 961 Phospholipase D Gene Family (Wang group) AT3G16785 65.5 0.0e+00 1258.4
Bma05g01024 . 1 439 Phospholipase D Gene Family (Wang group) AT3G16785 66.6 1.0e-169 594.3
Bma14g01317 . 37 1084 Phospholipase D Gene Family (Wang group) AT3G05630 64.7 0.0e+00 1389.4
Bma05g01024 . 1 562 Phospholipase D Gene Family (Wang group) AT3G05630 58.5 2.6e-179 626.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001766 2 4 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 2 2 2 2 3 4 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01024 Bma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.97291 0.0 0.0