Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01030 ATGAAAAATGCATACAAGTCAAATCCAGAAATCAGTGATCGGAATTTGCAGCTCCCCATCTGTACATCCGGCCAAAAGAGAAAAGCTACGCCATTTCCGAGATGTCTACAAAAAAGTATTCAAGAACAAGATATCAAAGTACAAGTAACTGAACTATTTACCAGCGCCATGACCAATTACAGCATATTTAGCCGGGACCATACAGAGGAAAAAACTGGTATTTTAAGTAATTGTCGCGTCGAAGATGAACTAACATGGCGGGAAACGAAAGTCAACAAGTTCCAGCTCTTTGGTCATGCCCAAGCTATGTCTCTCAAGAACTGCAGGGCCAAACAGATGAATCACCAGAAAATTGGTTTGAGGAGAGTAAAGAGCACACACTGCCAGAGAAATACGAGTGAAGTTTATTCCTTTTCTGGGGAAAAATCGAAGAGTGAGTTATCGGGATTGGTGAGAAGGGCGATTTCAAAGCTAAGTTTCTCCGAAGAGATGGAAAAGTGGGATGAAGATTATGCTGTGGAAGTTTCAACGGCTTACACAATGTTGAACGGAAAAACAGGAGTGAGATATAACAAGCTGAAGGAAGTAATCATAAATAAACTCGTAAGAGGAATTTCTACCTATAAAGAGGAGAAGATATTAAGAGCAGCTGTGTCGATATTGGTTTCCATCGTTTCCGCAAATGGCTCCGTCGTAGAAGATATCAAGAAGAACGGTTTACGGCTGTGCGATCTCGCGAGCGCGCTGAAGAAAAATGTGTACGAGGCGGCGATCCTTATCTATCTAATCAATCCAACTCCTTCAGAAATCAAGTCTTTAGAGCTTCTACCGACGTTGGTCGAAGTTGTGTGCGGTTCAAACGATTATCAGGAACGGCCGGCATCGCTCCAGCTAACGCCGCCGACGGCGTCACTAATGATTATCGAAGTTCTGGTGACTGCATTTGACGATGCCACGAACAATAAGCACTTGGCTGCTCTCAGTTCTCCCACTGTTCTTTGCGGGCTTCTGGAATTCGCGACGATCGATAACGTCGAAGAGTTGATCTCTCTGGCCACAATTCTCGTAAAGTGCATTCAATTTGACGGAAATTGCAGAAAGTTTATGTCGGAATTCACTCCCGTCGCTCCGTTCATCTATCTCCTCAAGTGTAACAGCGATCGGGCCATGTTCGCAGCGCTTGAATTTCTCCATGAAGTCCTTTGCATTCCAAGGTCGTCGGCCGTTTCGTTGCTGCGTAGGATTGAAAGAGAAGGAAGAAATGAATTGATGAACATACTAATGTTTTGTGTTAAACACCTCCAACCTGAGTATCAAATATTGGGAGCAAGTTTGCTGATTCAGCTATGTACAATGAACAGCAGCTCATATACAAGGGAGTACAAAGAGGAGGCCATACAGACCCTCATCAGATCAGTGGGATCTGAAGAATGCTCCAATTCACAGATACTCTCTGCTTTGATTTTATCAAATCTCGGAGGGACATATTCTTGGACCGGGGAATCCTATACAGTGCCATGGCTGGTCAGAAAATCAGGATTGAGCTCCATCACTCACCAAAACACGATCAAGAATGTCAACTGGTCAGACCAAATCCTGCAGGATGCCGGAACGGAGTTGTGGTCCGGCATGATTGCCGGAAGCTTTATTGAAGTTGGTATTCCGGTCTTCCATGCCTTGGCAAATGGGTTAAAGAGCAAAATAAAGAAGGTTTCTAGAGACTGTCTCGTGGCAGTTGCATGGCTTGGATGTGAAATCGCACGGAGTCCGGAGAGCACGAGATGTTCGGCCTGTGAGATTTTGTTGGGTGGATTTGAGCAGTTTTTGCACCCCGGATCGGAACTCGATGAACGGCTTCTAGCTTGTCTCAGTATATATAATTTCACTTCAGGAAAAGGGATGCAAAACTTGATTCATTTCTCTGAAGGAGTGAGGGAATCGTTAAGACGTCTTTCGAGCGTAACCTGGATGGCTGAGGAATTGCACAAAGTAACAGATTACTTTCTGCCCAATAGTTCAAGAATATCATGTGTTCACACTCAAATCTTGGAGATGGGTATCAGTAGCTGTGGAGCTGTATGTTCTCTCATCTACTACAAAGGACTGTTGTACAGCGGATACTCGGACGGCTCGATAAAGGTTTGGAATATCAGCAGGCAATCGAGCACCCTTATATGGGACGTAAAGGAGCACAAGAGGGCAGTCACATGCTTCACCCTTTCGGGTACCGGAGACAACCTTCTTAGTGGATCTGCAGATAAAACTATCCGGGTCTGGAGAATTGGTGAGAGGCAATTGGAGTGCATTGAAGTAATTACCTTTAAGGAACCAATTCAGCATATAGAATCATGTGGTCACATGATTTTTACTGTTACCCAGGGGCGAGGGGTGAAGGTGTTTGATACCACCAGAGAAGTCACAGTCATTTGCAAGCATAAGCAAGTGAAATGCATAAAGGCAGCTCAGGGTAAACTCTATGCAGGCTGCATGGACTCAAGCATACAGAAATTCTCAATAACGAACAATCGAGAACAAGAGATCAAAGCCCCATTGAAAAGTTGGAGAATTCTGCGGGATCCTATAAACACAATCTTCGTGTATAAAGATTGGCTTTTCAGTGCCGATTCAACGGTCCAAGGCTCACAGTTGCAGGAATGGAGAAGACATTGCAAACCTCAGTTGTCGATTGCGACAGGGAAAGGAGAAACTTTGCAGGCAATGGAGGTTGTTGAAGACTTTATATACTTAACCTCCAGATCATCAACAAACATTCAGATTTGGTTGCGAAGAACGCAGCATAAAGTAGGGAGAATTTCGGCTGGCAGCCGGATAACAAGTCTACTCACAGGCAACGACATCATTCTATGCGGCACAGCTACGGGTATAATTAAAGGCTGGATCCCCCTCTAG 2910 44.57 MKNAYKSNPEISDRNLQLPICTSGQKRKATPFPRCLQKSIQEQDIKVQVTELFTSAMTNYSIFSRDHTEEKTGILSNCRVEDELTWRETKVNKFQLFGHAQAMSLKNCRAKQMNHQKIGLRRVKSTHCQRNTSEVYSFSGEKSKSELSGLVRRAISKLSFSEEMEKWDEDYAVEVSTAYTMLNGKTGVRYNKLKEVIINKLVRGISTYKEEKILRAAVSILVSIVSANGSVVEDIKKNGLRLCDLASALKKNVYEAAILIYLINPTPSEIKSLELLPTLVEVVCGSNDYQERPASLQLTPPTASLMIIEVLVTAFDDATNNKHLAALSSPTVLCGLLEFATIDNVEELISLATILVKCIQFDGNCRKFMSEFTPVAPFIYLLKCNSDRAMFAALEFLHEVLCIPRSSAVSLLRRIEREGRNELMNILMFCVKHLQPEYQILGASLLIQLCTMNSSSYTREYKEEAIQTLIRSVGSEECSNSQILSALILSNLGGTYSWTGESYTVPWLVRKSGLSSITHQNTIKNVNWSDQILQDAGTELWSGMIAGSFIEVGIPVFHALANGLKSKIKKVSRDCLVAVAWLGCEIARSPESTRCSACEILLGGFEQFLHPGSELDERLLACLSIYNFTSGKGMQNLIHFSEGVRESLRRLSSVTWMAEELHKVTDYFLPNSSRISCVHTQILEMGISSCGAVCSLIYYKGLLYSGYSDGSIKVWNISRQSSTLIWDVKEHKRAVTCFTLSGTGDNLLSGSADKTIRVWRIGERQLECIEVITFKEPIQHIESCGHMIFTVTQGRGVKVFDTTREVTVICKHKQVKCIKAAQGKLYAGCMDSSIQKFSITNNREQEIKAPLKSWRILRDPINTIFVYKDWLFSADSTVQGSQLQEWRRHCKPQLSIATGKGETLQAMEVVEDFIYLTSRSSTNIQIWLRRTQHKVGRISAGSRITSLLTGNDIILCGTATGIIKGWIPL 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48862307 48868894 + Bma022189.1 Bma05g01030 83114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01030 969 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 725 IPR001680 GO:0005515
Bma05g01030 969 PANTHER OS04G0584500 PROTEIN 25 969 - -
Bma05g01030 969 ProSiteProfiles Trp-Asp (WD) repeats profile. 728 761 IPR001680 GO:0005515
Bma05g01030 969 SUPERFAMILY ARM repeat 196 585 IPR016024 -
Bma05g01030 969 Gene3D - 671 968 IPR015943 GO:0005515
Bma05g01030 969 SMART WD40_4 721 760 IPR001680 GO:0005515
Bma05g01030 969 SMART WD40_4 676 716 IPR001680 GO:0005515
Bma05g01030 969 SMART WD40_4 765 801 IPR001680 GO:0005515
Bma05g01030 969 SMART WD40_4 802 838 IPR001680 GO:0005515
Bma05g01030 969 Gene3D - 193 658 IPR011989 -
Bma05g01030 969 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 25 969 - -
Bma05g01030 969 SUPERFAMILY WD40 repeat-like 691 966 IPR036322 GO:0005515
Bma05g01030 969 Pfam WD domain, G-beta repeat 728 759 IPR001680 GO:0005515
Bma05g01030 969 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 728 761 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01030 - - - twl:119999481 1109.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01030 Bma-Chr5:48862307 Bma07g00500 Bma-Chr7:6167692 5.17E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01030 Bma_Chr05 FPKM 10.392201 10.694238 10.047703 8.763732 6.972743 5.163157 6.769602 10.944081 11.354101 12.160838