Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01031 ATGGAACCCGTCGAGCCACAGTCCCTTAAGAAGCTCAGCTTCAAATCCCTTAAACGAGCCCTAGACCTTTTCTCTCCCATCCACTCTCATCTCGCTCCTCCTGATCTTGAGAGGTGCCGTTTCATGCTTCTTTTTTTTTTTTCAGTGGCGATTTTTTTCGCTCAAATGCGCATTGAATTTTTTTTTTTGTTTATCTTAAAGTTTCCTTTTTTTGACAAAGAGTACCAATTATCCACATCTGCAATTATTGAAAGAATTCCTAGCAAGTGGCCTCGTCCAGTGTGGCATCCACCATGGAAAAACTATAGGGTTATAAGTGGCCACTTGGGATGGGTGAGATCCGTTGCATTTGATCCAAGTAACACATGGTTTTGTACTGGCTCTGCAGATAGAACCATCAAGATATGGGATGTTGCTAGTGGGAAGTTGAAACTCACCTTAACCGGACATATTGAGCAAATCCGAGGTCTTGCTGTCAGCAGCAAACACACTTACATGTTTTCCGCTGGAGATGACAAACAAGTGAAATGCTGGGATCTTGAGCAGAATAAGGTCATCCGGTCATATCATGGTCATTTAAGTGGTGTTTATTGCTTGGCCCTGCATCCTACTATTGATATTTTACTAACTGGTGGAAGGGATTCTGTCTGTCGGGTATGGGATATCCGAAGTAAAATGCAAATACACGCACTTTCTGGGCATGATAACACAGTCTGCTCAGTTTTTACTCGACCTACGGATCCACAAGTTGTGACTGGATCCCACGACTCTACCATTAAGTTTTGGGACTTGAGACATGGGAAAACTATGTCAACTCTGACTCACCACAAGAAATCTGTGCGAGCAATGGCGCTTCATCCAAAAGAAAATTGTTTTGCATCTGCATCAGCTGACAATATCAAAAAATTCAACCTTCCAAATGGGGAGTTTTTACACAATATGCTCTCTCAGCAGAAGACTATCATCAATACCATGGCTGTGAACGAGGAAGGTGTGATGGCAACTGGAGGTGACAATGGTAGCTTATGGTTCTGGGACTGGAAAAGTGGTCACAATTTTCAGCAATCACAAACAATTGTGCAGCCAGGCTTTTAA 1095 42.74 MEPVEPQSLKKLSFKSLKRALDLFSPIHSHLAPPDLERCRFMLLFFFSVAIFFAQMRIEFFFLFILKFPFFDKEYQLSTSAIIERIPSKWPRPVWHPPWKNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQIRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRHGKTMSTLTHHKKSVRAMALHPKENCFASASADNIKKFNLPNGEFLHNMLSQQKTIINTMAVNEEGVMATGGDNGSLWFWDWKSGHNFQQSQTIVQPGF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48869869 48876326 + Bma031224 Bma05g01031 83115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Bma05g01031 364 SUPERFAMILY WD40 repeat-like 94 354 IPR036322 GO:0005515
Bma05g01031 364 CDD WD40 101 350 - -
Bma05g01031 364 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Bma05g01031 364 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Bma05g01031 364 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 142 - -
Bma05g01031 364 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 74 363 IPR045241 GO:0000398
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 224 - -
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Bma05g01031 364 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 265 - -
Bma05g01031 364 PANTHER BNAA01G27690D PROTEIN 74 363 - -
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Bma05g01031 364 Gene3D - 86 363 IPR015943 GO:0005515
Bma05g01031 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 184 - -
Bma05g01031 364 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Bma05g01031 364 SMART WD40_4 307 346 IPR001680 GO:0005515
Bma05g01031 364 SMART WD40_4 266 304 IPR001680 GO:0005515
Bma05g01031 364 SMART WD40_4 182 221 IPR001680 GO:0005515
Bma05g01031 364 SMART WD40_4 224 263 IPR001680 GO:0005515
Bma05g01031 364 SMART WD40_4 98 137 IPR001680 GO:0005515
Bma05g01031 364 SMART WD40_4 140 179 IPR001680 GO:0005515
Bma05g01031 364 Pfam WD domain, G-beta repeat 142 179 IPR001680 GO:0005515
Bma05g01031 364 Pfam WD domain, G-beta repeat 100 137 IPR001680 GO:0005515
Bma05g01031 364 Pfam WD domain, G-beta repeat 184 221 IPR001680 GO:0005515
Bma05g01031 364 Pfam WD domain, G-beta repeat 228 263 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01031 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - csin:114292689 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01726 Bma-Chr1:54461556 Bma05g01031 Bma-Chr5:48869869 1.19E-09 dispersed
Bma01g02244 Bma-Chr1:79584736 Bma05g01031 Bma-Chr5:48869869 7.12E-06 dispersed
Bma05g01031 Bma-Chr5:48869869 Bma08g00833 Bma-Chr8:46184992 2.52E-12 dispersed
Bma07g00309 Bma-Chr7:3752708 Bma05g01031 Bma-Chr5:48869869 1.08E-08 dispersed
Bma05g01031 Bma-Chr5:48869869 Bma15g00603 Bma-Chr15:7614787 1.74E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01031 Bma_Chr05 FPKM 19.277174 17.277103 33.80925 31.138481 18.584797 19.924452 19.069723 14.631149 15.694355 18.171947