Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01032 ATGTCGCGGAAAGGTTTAATGGAGCAAGATTTAAGTAAACTGGATGTAACAAAGTTGAGTCCAACATCCAAGGAAGTTATATCCCGTCAAGCCACCATTAACATTGGCACCATTGGTCATGTGGCACACGGCAAGTCGACAGTTGTGAAAGCAATATCTGGTGTTCAGACTGTTCGTTTTAAAAACGAACTAGAGCGTAACATCACTATCAAGCTTGGATATGCAAATGCAAAGATATACAAATGCGAAGATGATCGATGCCCTCGACCTTTGACATACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGGTTTGAAAATTGCAGGATGGAACTTCTAAGACATGTGTCTTTTGTAGATTGTCCTGGTCATGATATTCTCATGGCTACCATGCTTAATGGAGCAGCAATTATGGACGGAGCACTTCTTTTAATTGCTGCAAATGAAAGCTGTCCCCAACCTCAAACTTCAGAGCATCTGGCTGCTGTTGAAATCATGCGCCTCCAACATATTATAATCCTTCAAAACAAAGTTGATCTCATTCAAGAAAATGTAGCCATTAATCAGCATGAAGCAATTAAAAAATTTATTAAAGGGACTGTAGCTGATAATGCTCCTATTGTTCCAATTTCTGCCCAGCTAAAGTATAACATCGATGTTGTTTGTGAATATATAGTGAAGAACATTCCCATTCCGGAGCGAAACTTTGTGTCCCCTCCAAACATGATTGTAATTCGATCATTTGATGTCAACAAGCCTGGATTCGAAGTTGATGAAATCAAAGGTGGCGTAGCCGGTGGAAGTATCCTTAGGGGTGTTTTGAAGGTGAACCAATATATTGAGGTTCGTCCTGGAATTGTTGTTAAGGATGAAAGTGGGAACATCAAATGCACACCAATATATTCAAGAATTGTTTCTTTGTATGCGGAGCAAAATGAGCTTCAATTTGCTGTGCCTGGTGGCCTCATCGGAGTTGGTACAACCATGGATCCCACTTTGACGCGAGCTGATAGATTGGTTGGCCAGGTTCTTGGTGAAGTTGGATCGCTCCCTGAGGTTTTCGTTGAGCTTGAGGTTAATTTCTTCCTACTTCGACGACTTCTGGGTGTGAGAACGAAGGGCTCGGAAAGGCAAGGAAAGGTTTCAAAACTAGCCAAGGGGGAGATCCTAATGTTGAACATTGGATCTATGTCCACTGGTGCCCGTGTCCTTGCGGTGAAGAATGATCTGGCAAAGTTACAACTCACTTCTCCGGTTTGTACGAGCAAAGGGGAAAAAATAGCTTTGAGTCGACGAGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGCCAGATTCAAGCCGGTACCACTCTTGAAATTCCTCCCTCCCCCATTTAA 1395 42.94 MSRKGLMEQDLSKLDVTKLSPTSKEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPLTYKAYGSGKEDSPLCDVPGFENCRMELLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIKKFIKGTVADNAPIVPISAQLKYNIDVVCEYIVKNIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQYIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLEIPPSPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48878058 48881608 + Bma022190.1 Bma05g01032 83116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01032 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Bma05g01032 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Bma05g01032 464 Gene3D Translation factors 242 356 - -
Bma05g01032 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Bma05g01032 464 Gene3D Translation factors 357 456 - -
Bma05g01032 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Bma05g01032 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Bma05g01032 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Bma05g01032 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 242 IPR027417 -
Bma05g01032 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Bma05g01032 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Bma05g01032 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Bma05g01032 464 Gene3D - 30 240 IPR027417 -
Bma05g01032 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01103 Bma-Chr4:25732579 Bma05g01032 Bma-Chr5:48878058 0 dispersed
Bma05g01032 Bma-Chr5:48878058 Bma15g00565 Bma-Chr15:6533233 1.39E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01032 K03242 - cpap:110819896 880.552