Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01033 ATGGATGGTAATAAGGAAGAAGCGTTAAGGTGCGTTTGTATTGCGGAAGAGGCCATTTCTGCTGGTAATAAAGAGCGTGCACTAAAATTTATTAAACTCGCTCAGCGCCTTAACCATAGTCTGCAAGTTGACGATCTTCTGGCTGCATGCGAGAATCTCAATTCTGGTCGTGGTTCCAGCAAATCTGGTGTTGATGAAAAACGTGGTGAGAATAAGAGCAAGCCTGGTCCAATAAATTCAGGGGCGGAATTGAATGGGGAGCGTAGTTACACACAAGAGCATGTTCAATTAATTAAACAGATTACTCGTAACAAGGACTATTATAGTGTTCTTGGGGTGGAAAAGACATGCTCGGTTGAAGAGATTAAGAAGGCTTATAGGAAATTGTCCTTGAAAGTGCACCCAGATAAAAACAAGGCTCCTGGTTCTGAAGAGGCATTTAAGAAAGTATGCAAGGCTTTCAAGTGTCTGAGTGATGATGGTTCGAGGAGGCAATATGATCATACAGGTTTGGTTGAGGAATATGAACACAACCAACAATATAATGTTAGGCAAAGAAGGAGGAGAACTGAACATGATTTGTTTGACGATAATTTTGATCCCAACGAGATATTCAGGGCATTTTTTGGTCAGGGAGACGTTTTTCGAACAAGTCATGTATATAGAGCGGGAGGAATGCACAGTCAAACAAGGACAGATTTTCAAGGAGGAAAACCTAACTTTTTTCTTCTCCTTCAAATACTGCCATTTTTGTTGATCTTCTTGCTTGCTTATCTGCCATTTTCAGAACCAGAGTATTCTTTGCATAAGAATGACTCCTATACCATTCTACTGACAACAGAGAAACATGGAGTTGAATTTTATGTTAAATCATCGGCCTTTGATGAAAAGTATCCTCCTGGGAGTGGTGCTCGAGCTGACATGGAAAGCACTGTGATAAAGGATCACCGAAATATGCTTTGGCGATATTGTCACATCGAGCTCCAGAGGCGCCAGTGGAATAGAAATCTTCCCACACCTCACTGCGATAAGCTGCAGACCCTGGAGGTAGCATAA 1056 41.67 MDGNKEEALRCVCIAEEAISAGNKERALKFIKLAQRLNHSLQVDDLLAACENLNSGRGSSKSGVDEKRGENKSKPGPINSGAELNGERSYTQEHVQLIKQITRNKDYYSVLGVEKTCSVEEIKKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDDGSRRQYDHTGLVEEYEHNQQYNVRQRRRRTEHDLFDDNFDPNEIFRAFFGQGDVFRTSHVYRAGGMHSQTRTDFQGGKPNFFLLLQILPFLLIFLLAYLPFSEPEYSLHKNDSYTILLTTEKHGVEFYVKSSAFDEKYPPGSGARADMESTVIKDHRNMLWRYCHIELQRRQWNRNLPTPHCDKLQTLEVA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48887080 48888135 - Bma022191.2 Bma05g01033 83117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01033 351 ProSiteProfiles dnaJ domain profile. 106 170 IPR001623 -
Bma05g01033 351 PANTHER AT29763P-RELATED 1 350 - -
Bma05g01033 351 CDD DnaJ 106 159 IPR001623 -
Bma05g01033 351 Pfam Domain of unknown function (DUF1977) 262 332 IPR015399 -
Bma05g01033 351 PRINTS DnaJ domain signature 126 141 IPR001623 -
Bma05g01033 351 PRINTS DnaJ domain signature 108 126 IPR001623 -
Bma05g01033 351 PRINTS DnaJ domain signature 142 162 IPR001623 -
Bma05g01033 351 Gene3D DnaJ domain 102 220 IPR036869 -
Bma05g01033 351 SUPERFAMILY Chaperone J-domain 102 217 IPR036869 -
Bma05g01033 351 Pfam DnaJ domain 106 167 IPR001623 -
Bma05g01033 351 PANTHER CHAPERONE PROTEIN DNAJ 49 1 350 - -
Bma05g01033 351 MobiDBLite consensus disorder prediction 56 86 - -
Bma05g01033 351 SMART dnaj_3 105 162 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01033 K09518 DNAJB12; DnaJ homolog subfamily B member 12 - tcc:18603516 491.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00919 Bma05g01033 CCT
Bma05g01033 Bma06g01486 CCT
Bma02g00919 Bma05g01033 ECH
Bma05g01033 Bma06g01486 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01033 Bma-Chr5:48887080 Bma11g00869 Bma-Chr11:31837762 1.45E-76 dispersed
Bma05g01033 Bma-Chr5:48887080 Bma07g00584 Bma-Chr7:8409266 1.15E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g137 . . . . . Bpe14g01111 . Bma05g01033 . . Cma06g01545 Cma14g01605 . Car14g01423 . Cpe08g00168 Cpe03g01347 . . . . . . . . . . . . . . Cone14ag0743 . . . . . . . Blo02g00491 Blo07g00163 Bda11g00516 . Bpe05g00834 Bpe13g00678 Bma02g00919 Bma06g01486 . . Cmo14g01640 . . . . . . . . . . . . . Cla05g00676 Cam05g0743 Cec05g0749 Cco05g0749 Clacu05g0735 Cmu05g0700 Cre05g0774 . Csa03g01494 Chy06g00732 .
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010696 0 3 0 1 1 0 1 1 0 2 1 0 1 2 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01033 Bma_Chr05 FPKM 26.101707 25.95763 26.093184 25.084904 30.717175 26.608376 31.692175 34.00893 35.798862 29.550205