Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01035 ATGGGTGCTCGAACCAGTAATCGTAAGCGTGACGACGAGTGCTTTAGCTTGAATCGTGCGTACTCGTCGCTTAGTTCACCGGATTTTCACTTACCAAAGAAGCCCAAATTTACTTCGGTGCAACAGAGCCAGGATCGTCGAATTATTCCTTCCAACAGTTCGGTGGCTAGACTCTCTCGATACCCGGCAGAGACTTCACAGTTGCGTAGAGAAGTTCATGCTCCTTGTAGAACGTTGAAATTTGGGATATTCAAGAGTTCGAGGCATTCCGGAACAAAGAGTGGTGGCATCTTTGAAAAGAACGAGGTGGGGGATAGTATGGGGAATATTTTGAGCTTTAAATACAATGAGGCGAAGAGCCTTGCATTTGGTGCATTACGTTACTCGAAGAAGGATGAAGAAGTAATCGAATTGGATACAGATACTGAAAATAATGTAGTTGTATCTGAGGATTCTAGTATAGAAGAAGTCAATGCAATGAAAATTGAAGAGCTAAAAGATCACTCAGATGTAATGGACTGGAGTTCTCGTGAGGTTGACGGGGTTGTAGTAAATACGCCAGAATTGGATGCAAAGGAAATGGATGGTCAAAATGGGCCATCGTCGTCTTCCATGATTACTGAAGCGAGGAACGGGAACGAGAAACTTGACGGTGCAGAAAAGATGTTGGATGATTTGTCGCTGGCTGGTGACATATCCAGTGTTTCTGTGTACAAGAAGTTGCTTGAACAACTCGAGAGACGAACATCCAAATTAATGAACTTAGATTTTGAAATTCAACTAAATGAGAAGCGTCGAGCTGCTTTACACGTAGAACGTCCAGAAAAGAAGGAAGTAGAGGAAGTACCACGAGAACCTTTTGTGCCGCTTACAAGGGAAGAAGAGGATGAGATTGGACGTGCATTTTCTGGTAACAGAGGGAAGGTTTTGACCACCCATGAGAATTCTAACATAGTGATTACTGGAGAAATTTTGCAATGCCTTGGACCAGGAGCATGGTTGAATGATGAGGTTATAAATTTGTACTTTGAATTGTTGAAAGAAAGGGAAAATAGGGAACCAAAGAAGTTCTTGAAATGTCATTTCTTTAATACATTTTTCTATAAAAAGTTGATTAGCGGAAGAAGTGGCTATGATTATAAATCTGTTAGAAGATGGACTACCCAAAGGAAATTGGGATATGAGCTTATTGATTGTGACAAAATTTTTGTCCCCATTCACAGAGAGATACATTGGTGCCTGGCAGTAATCAATAAAAAGGAAGAGAAGTTCCAATATCTTGATTCACTCAAAGGAGTGGATACCCACGTCTTAAAAATATTGGCTAGGTATTTAATAGACGAAGCAAAAGACAAGAGCGGGAAGGTGATCGACATGAATTCTTGGGAACAAGAATTTGTTAAAGACCTTCCTGAACAGGAGAATGGGTTTGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGGGGTTTAGGACTCTGCTTCAACCAGCAACACATGCCGTATTTTCGACTGAGGACAGCCAAGGAGATTCTAAGATTGCGGGCCGACTGA 1563 41.39 MGARTSNRKRDDECFSLNRAYSSLSSPDFHLPKKPKFTSVQQSQDRRIIPSNSSVARLSRYPAETSQLRREVHAPCRTLKFGIFKSSRHSGTKSGGIFEKNEVGDSMGNILSFKYNEAKSLAFGALRYSKKDEEVIELDTDTENNVVVSEDSSIEEVNAMKIEELKDHSDVMDWSSREVDGVVVNTPELDAKEMDGQNGPSSSSMITEARNGNEKLDGAEKMLDDLSLAGDISSVSVYKKLLEQLERRTSKLMNLDFEIQLNEKRRAALHVERPEKKEVEEVPREPFVPLTREEEDEIGRAFSGNRGKVLTTHENSNIVITGEILQCLGPGAWLNDEVINLYFELLKERENREPKKFLKCHFFNTFFYKKLISGRSGYDYKSVRRWTTQRKLGYELIDCDKIFVPIHREIHWCLAVINKKEEKFQYLDSLKGVDTHVLKILARYLIDEAKDKSGKVIDMNSWEQEFVKDLPEQENGFDCGVFMIKYADFYSRGLGLCFNQQHMPYFRLRTAKEILRLRAD 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48902506 48906671 - Bma022193.1 Bma05g01035 83119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01035 520 Gene3D Adenoviral Proteinase; Chain A 276 517 - -
Bma05g01035 520 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 518 - -
Bma05g01035 520 MobiDBLite consensus disorder prediction 23 42 - -
Bma05g01035 520 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 518 - -
Bma05g01035 520 Pfam Ulp1 protease family, C-terminal catalytic domain 333 514 IPR003653 GO:0006508|GO:0008234
Bma05g01035 520 SUPERFAMILY Cysteine proteinases 286 518 IPR038765 -
Bma05g01035 520 ProSiteProfiles Ubiquitin-like protease family profile. 318 490 IPR003653 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01035 K08592 SENP1; sentrin-specific protease 1 [EC:3.4.22.68] - jre:108994812 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01035 Bma-Chr5:48902506 Bma14g01789 Bma-Chr14:38485184 1.33E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01035 Bma_Chr05 FPKM 9.36327 11.081692 9.286284 9.102676 8.06807 6.366424 8.550746 5.864242 6.475523 5.900146