Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01038 ATGGGGGGAAAGAGAGAGAGAGAGAGAGAGAGCAGAAGATCTTTGGGTTTTACCTTGTTTCGTCAATGCGCTCTGTTTGAGCTCTCACGCTTCGTTATCGTTCCGATTTTCTTCCTCTTCTTAGGGTTAGGGTTGCTGGTTGAGGTTTCTTTGGCTTATCCGGCAGCTTCATTCTCTCAGGTAAGATTATGTGATATTTGGTCCAACATAGAGTGTGGTGAAATGACGATGAGTGATCGCAAGACTATAGACTTAGAGCAAGGATGGGATATCATGCAAAAGGGGATCACAAAGCTGAAAAACATCCTAGAGGGCTTGCCCGAGCCTCAGTTCAGTTCTGAGGATTACATGACGCTCTATACAACGATTTATAATATGTGTACTCAAAAGCCTCCTCATGATTACTCCCAGCAGCTCTACGACAAATACCGGGAGTCTTTTGAGGAGTACATCACTTCGACAGTATTGCCATCTTTGAGAGAGAAACATGACGAATTTATGTTGAGAGAGCTCGTAAAGCGGTGGTCTAATCATAAAGTGATGGTTAGATGGCTTTCCCGTTTCTTTTATTATCTTGATCGATACTTTATTGCTCGGAGGTCACTTCCACCACTTAATGAAGTTGGATTAGCTTGCTTCCGTGACCTGGTTTATAAGGAGTTAAATTGTAAAGTAAGAGATGCAGTTATTTCACTGATTGATCAAGAACGTGAAGGAGAGCAGATTGATCGCGCTCTATTGAAGAATGTTTTGGATATATTTGTTGAGATTGGAATGGGTCAGATGGATTGTTATGAGAACGACTTTGAAGCAGCCATGCTGAATGATACTGCTGCTTATTACTCTAGGAAAGCTTCTAGTTGGATCCTTGAAGATTCCTGTCCTGATTATATGCTAAAAGCAGAGGAGTGCTTGAAACGAGAGAAAGATAGAGTTTCACATTATTTGCACTCTAGCAGCGAGCCAAAGTTGTTGGAGAAAGTTCAACATGAGTTATTGTCCGTGTATGCTACCCAACTGCTTGAAAAGGAGCATTCAGGATGTCATGCATTGCTAGGGGATGACAAGGTTGAAGATCTATCAAGAATGTTTAGACTCTTTTCAAAAATACCACGAGGCTTAGATCCAGTTTCCAGCATATTTAAGCAGCATGTTACTGCTGAAGGAACAACCTTGGTAAAACACGCAGAAGATGCTGCAAGCAACAAGAAAGCAGATAAAAAGGATGTGGTGGGTCTGCAAGAACAGGTTTTTGTCAGAAAAGTGATTGAACTGCATGACAAATATCTCGCATATGTGAATGATTGTTTTCAGAATCATACTCTTTTTCACAAGGCACTCAAGGAGGCTTTTGAGGTGTTTTGTAACAAGGGCGTTGCTGGGAGTTCAAGCGCCGAATTACTTGCAACTTTTTGTGATAACATTCTAAAGAAAGGTGGAAGTGAGAAATTAAGTGATGAAGCAATTGAAGAAACACTTGAAAAGGTGGTGAAGTTACTCGCATATATTAGTGACAAAGACCTATTTGCTGAATTCTATAGGAAAAAGCTTGCTCGAAGGCTACTTTTTGATAAGAGCGCTAATGATGATCATGAAAGAAGTATTTTGACAAAATTAAAGCAGCAATGTGGTGGACAGTTCACCTCAAAAATGGAAGGAATGGTCACGGACTTGACATTAGCGAGGGAGAATCAAACCAGCTTTGAGGAGTATCTGAGCAATAATTTAAATGCAAATCCAGGCATTGACTTGACAGTCACTGTTTTGACTACAGGCTTCTGGCCAAGTTACAAGTCTTTTGACCTTAATCTTCCTGCAGAGATGGTCAAGTGTGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACAAAGCATAGAAAACTTTCATGGATATACTCGCTGGGTACTTGTAATATCAGTGGAAAATTTGACTCAAAAACAATTGAGTTGATCGTGACGACTCATCAGGCTTCTGTATTGCTATTATTCAATTCTGCGGAAAGATTGAGTTATTCTGAAATTATGACGCAATTGAATTTGAGCGACGATGATGTTGTCAGACTACTCCATTCCTTGTCATGTGCCAAGTATAAAATCCTTATCAAGGAACCAAACACGAAAACAATCTCTCCGACTGATTCCTTCGAGTTTAATTCAAAATTTACAGACAAAATGAGGAGAATTAAGATTCCTCTTCCTCCTGTCGATGAAAAAAAGAAAGTAATTGAAGACGTCGACAAGGATAGACGGTATGCCATTGATGCCTCGATTGTACGCATTATGAAAAGCCGGAAAGTTTTGGGTCATCAGCAGTTGGTGATGGAGTGTGTTGAGCAGCTCGGCCGCATGTTCAAGCCGGATTTCAAGGCAATCAAAAAGAGAATTGAAGATCTGATCACCCGAGATTATTTGGAGAGGGACAAAGATAACCCCAGCATGTTCCGGTATTTGGCGTAA 2457 40.37 MGGKRERERESRRSLGFTLFRQCALFELSRFVIVPIFFLFLGLGLLVEVSLAYPAASFSQVRLCDIWSNIECGEMTMSDRKTIDLEQGWDIMQKGITKLKNILEGLPEPQFSSEDYMTLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLACFRDLVYKELNCKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDCYENDFEAAMLNDTAAYYSRKASSWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLGDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGTTLVKHAEDAASNKKADKKDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNLNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLSWIYSLGTCNISGKFDSKTIELIVTTHQASVLLLFNSAERLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILIKEPNTKTISPTDSFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPSMFRYLA 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 48944562 48961341 - Bma022196.1 Bma05g01038 83122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01038 818 Gene3D Cullin Repeats 464 577 - -
Bma05g01038 818 SUPERFAMILY Cullin homology domain 462 731 IPR036317 -
Bma05g01038 818 SMART Cullin_Nedd8_2 745 812 IPR019559 -
Bma05g01038 818 Gene3D - 735 818 IPR036388 -
Bma05g01038 818 Gene3D Cullin Repeats 216 335 - -
Bma05g01038 818 SUPERFAMILY Cullin repeat-like 85 458 IPR016159 -
Bma05g01038 818 Pfam Cullin family 98 721 IPR001373 GO:0006511|GO:0031625
Bma05g01038 818 SMART cul_2 494 643 IPR016158 -
Bma05g01038 818 SUPERFAMILY Winged helix DNA-binding domain 733 818 IPR036390 -
Bma05g01038 818 Gene3D Cullin Repeats 341 463 - -
Bma05g01038 818 Gene3D Cullin; Chain C, Domain 2 581 734 - -
Bma05g01038 818 ProSiteProfiles Cullin family profile. 463 693 IPR016158 -
Bma05g01038 818 ProSitePatterns Cullin family signature. 791 818 IPR016157 GO:0006511|GO:0031461|GO:0031625
Bma05g01038 818 PANTHER CULLIN 3B 77 817 - -
Bma05g01038 818 PANTHER CULLIN 77 817 IPR045093 -
Bma05g01038 818 Pfam Cullin protein neddylation domain 748 810 IPR019559 -
Bma05g01038 818 Gene3D Cullin Repeats 76 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01038 K03347 CUL1, CDC53; cullin 1 - csv:101216323 1399.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g01038 Bma06g01505 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01038 Bma-Chr5:48944562 Bma06g01505 Bma-Chr6:51512871 0 dispersed
Bma05g01038 Bma-Chr5:48944562 Bma14g00944 Bma-Chr14:10746038 4.28E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g309 . . . Bda08g00287 . . . Bma05g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01532 . . . Blo07g00176 Bda11g00530 . Bpe05g00840 Bpe13g00660 . Bma06g01505 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01038 Bma_Chr05 FPKM 24.327463 27.979284 21.899551 23.301582 17.257093 16.953913 19.144697 34.013649 31.604923 34.919346