Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g01047 ATGTTAAGACCAAATGCTTCTCTTAATTCCGCTTTAAACTTGTTAGTCCAAGCTCAAGTTAGTTCGATACCCATCGTTGATGATAATGACTCGTTGCTTGATATATATTGTCGGAGTGATATAACGGCTTTAGCTAAAGACAGAGCCTACACGCATATAAATCTCGACGAAATGACTATTGATCAGGCCTTGCAATTGGGGCAAGATTCATGTTCTTATGAACAAAGAAATCAAAGATGTCACATGTGTTTGCGATATGATTCGTTGCATAAAGTTATGGAACGTTTGGCCGATACGGGTGTTAGACGGCTCATTATTGTGGAAGCCGGGAGTAAGAGAGTGGAGGGCATCGTTTCGCTGACCGACATTTTCAAGTTCTTGCTCAAATAG 390 40.77 MLRPNASLNSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTIDQALQLGQDSCSYEQRNQRCHMCLRYDSLHKVMERLADTGVRRLIIVEAGSKRVEGIVSLTDIFKFLLK 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49133925 49135575 - Bma022207.1 Bma05g01047 83131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g01047 129 ProSiteProfiles CBS domain profile. 76 129 IPR000644 -
Bma05g01047 129 SUPERFAMILY CBS-domain pair 2 128 IPR046342 -
Bma05g01047 129 ProSiteProfiles CBS domain profile. 1 51 IPR000644 -
Bma05g01047 129 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 1 128 - -
Bma05g01047 129 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 1 128 - -
Bma05g01047 129 SMART cbs_1 1 46 IPR000644 -
Bma05g01047 129 SMART cbs_1 79 128 IPR000644 -
Bma05g01047 129 Pfam CBS domain 2 42 IPR000644 -
Bma05g01047 129 Pfam CBS domain 81 128 IPR000644 -
Bma05g01047 129 Gene3D - 1 129 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g01047 - - - csv:101215603 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01047 Bma-Chr5:49133925 Bma05g01056 Bma-Chr5:49253053 2.30E-91 proximal
Bma04g01112 Bma-Chr4:26169877 Bma05g01047 Bma-Chr5:49133925 9.36E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025040 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g01047 Bma_Chr05 FPKM 11.614886 11.802873 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0